Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01373 ATGTTTCCTTTTCAGAGCTCTTCCTATCCGAACTGGTTGAATCTTAACGAACACGTTCAACATACAAACACGTCGATCAACTCAGTCGACGCAGGAGATTATTCGAACTCGACCTCGATGGATATGAGAAAATCGACGGAAGTCAGCAAGAGTCACAAAGAAGCAGAGAGAAGACGTAGGCAGCGAATCAATGCTCATCTCTCCACCCTACGGAGTCTTCTCCCGAACACCACCAAGACAGATAAGGCGTCGCTGCTAGCTGAAGTAGTGAGCCACGTGAAGAATCTGAGAAGAGACCTTTGCAGAAACAACAGCGACGAACCGGAGCTTGGATTAGAGCCATGGCAGTTTCCGACGGAGTTTGACGAGGCAACTCTGAGTTTCTGTGATGACGAAGGAAAGCTCATGAAAGCGATCGTCTGCTGCGCGGACCGTCCGGGTCTGGTCATGGATTTGGCGCAAGCTATCCGGTCGGTTCAAGCCAGAGTGGTCCGGGCTGAAATGACAACAGTAGGTACCCGGACAAAAAGCGTGGTGGTGTTGAAATGGACTGGCGGAGTATGCGGCGGAGAAGAAAATATTGCCGCTCTGAAGCGGGTGTTGAAGGCCGTAGTAGACAACCGGATTTCGGATCCTAGAGTGACCCAACTGGCTCGGGCTAATAATCCAATTAATCTTGAGCATCATTTGCATTTAGGATAG 702 50.0 MFPFQSSSYPNWLNLNEHVQHTNTSINSVDAGDYSNSTSMDMRKSTEVSKSHKEAERRRRQRINAHLSTLRSLLPNTTKTDKASLLAEVVSHVKNLRRDLCRNNSDEPELGLEPWQFPTEFDEATLSFCDDEGKLMKAIVCCADRPGLVMDLAQAIRSVQARVVRAEMTTVGTRTKSVVVLKWTGGVCGGEENIAALKRVLKAVVDNRISDPRVTQLARANNPINLEHHLHLG 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21241731 21242524 - Bma001713.1 Bma01g01373 75890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01373 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Bma01g01373 233 MobiDBLite consensus disorder prediction 24 58 - -
Bma01g01373 233 Pfam Helix-loop-helix DNA-binding domain 50 96 IPR011598 GO:0046983
Bma01g01373 233 Gene3D - 41 104 IPR036638 GO:0046983
Bma01g01373 233 SUPERFAMILY ACT-like 139 206 IPR045865 -
Bma01g01373 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 116 IPR036638 GO:0046983
Bma01g01373 233 SMART finulus 53 102 IPR011598 GO:0046983
Bma01g01373 233 MobiDBLite consensus disorder prediction 24 44 - -
Bma01g01373 233 Gene3D - 138 211 - -
Bma01g01373 233 PANTHER OS09G0463900 PROTEIN 31 212 - -
Bma01g01373 233 PANTHER TRANSCRIPTION FACTOR BHLH30 31 212 IPR045847 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01373 - - - jre:109013704 236.884
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01373 Bma02g00111 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01373 Bma-Chr1:21241731 Bma02g00175 Bma-Chr2:1571563 6.88E-115 dispersed
Bma01g01373 Bma-Chr1:21241731 Bma02g00111 Bma-Chr2:1020575 1.16E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g504 . . Bda01g00912 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag1448 . . . . . . . . . . Bpe02g01151 . Bma01g01373 Bma02g00111 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007814 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56724 PF00010 HLH 5.70E-12 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01373 Bma_Chr01 FPKM 0.596466 0.495067 0.758627 0.586025 2.411575 1.933615 2.306557 1.247571 0.867123 1.163253