Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01374 ATGGCTAGAGAGAAGATCAAGATCAAGAAGATTGATAACTTGACTGCTAGACAAGTCACTTTCTCTAAGAGAAGACGAGGGCTTCTCAAGAAAGCCGAGGAGCTCTCTGTTCTCTGCGATGCTGAAGTTGCTCTCCTCATCTTCTCTGCTACTGGAAAGCTCTTTGAATATTCCAGCTCAAGCATGAAAGACATAATTGGAAGGTACAGTTTGCAAGGCAATAACCTGAGAAAACTGGATGAACCCTCCTTGGAGCTTCAGCTGATGGAGAATAGCAATTGCAGCAGAATGAAAAAGGAAGTTGCAGATAAGGCTCGTCAACTGAGACAAATGAGAGGTGAAGATCTTGATGGTTTAAAATTGGACGAGTTGATGCAATTAGAAAAATTGATGGATGCAGGTCTAACCCGTGTTGTCAAGACTAAGGACGAACGGATTACGAATGAAATTAACGCCCTCGAAGCTAAGGAAGCAAAGTTGATAGAAGAGAACAAGAAGCTAGAACAAATGGCTGTCATGCTGTCTAAAGAGAAAAGATCCGAATCAGAAGTTGCTACCCAAGAAGACGGCGTGTCGTCCGATCTGTTGGCCACCAACGTTTGCAGCTGTAACAGTGGCCCTCCGAACGAAGATGATAGCTCCGATACATCCCTCAAACTAGGGCTACCTTTCTCTAGCTGA 681 44.2 MAREKIKIKKIDNLTARQVTFSKRRRGLLKKAEELSVLCDAEVALLIFSATGKLFEYSSSSMKDIIGRYSLQGNNLRKLDEPSLELQLMENSNCSRMKKEVADKARQLRQMRGEDLDGLKLDELMQLEKLMDAGLTRVVKTKDERITNEINALEAKEAKLIEENKKLEQMAVMLSKEKRSESEVATQEDGVSSDLLATNVCSCNSGPPNEDDSSDTSLKLGLPFSS 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21298583 21309193 + Bma001714.1 Bma01g01374 75891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01374 226 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Bma01g01374 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Bma01g01374 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Bma01g01374 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 220 - -
Bma01g01374 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 MobiDBLite consensus disorder prediction 201 226 - -
Bma01g01374 226 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g01374 226 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bma01g01374 226 Coils Coil 94 114 - -
Bma01g01374 226 Coils Coil 143 177 - -
Bma01g01374 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma01g01374 226 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01374 Bma-Chr1:21298583 Bma02g00105 Bma-Chr2:951013 1.81E-40 dispersed
Bma03g01203 Bma-Chr3:18498384 Bma01g01374 Bma-Chr1:21298583 4.21E-77 transposed
Bma08g00038 Bma-Chr8:560062 Bma01g01374 Bma-Chr1:21298583 1.05E-54 transposed
Bma01g01374 Bma-Chr1:21298583 Bma02g00112 Bma-Chr2:1031212 4.89E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56725 PF01486 K-box 1.40E-14 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01374 - - tcc:18591803 293.508