Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01375 ATGGTACCGGGAGGAGGAAGTGGGACTTCTATTCTAAAATCTGCTACCCTGATATTGACTAGGGCATTAGAGCCATTAGTCCTACCTTCAGACGTCAGCCAAGCTATTAAACAGCGACTTCTTTATTTTGTGAAATCATTGTCAACAATGCTTGCGTTTGCCTATTGTCTATCGAGCTTGATTCAACAGGCACAAAAGTTCTTCATTGAAACAAATGATTCTGGTGAAGCAAGAAATATGGGTTTCGATTTTGCTGGGAAAACTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTTGGTTTTTCTACGCAAAAGTGGCTGACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCGGGTCGTGAGATTTTGACAAATTTCCTTTCAAGCATAATGATTCATGCCACGAGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATTGACGGCTATGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCTCCAACAATTATCAGAGGCGATGATCGAGAAGCAGTTCATATCCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGTATCAAGTCCCATCTTGCCATCAGCCACTTTGACATCAATAAAATCAATAATGTTGTAGCTGACATGCGCAAAGTTTTAGCGAAAAATCCTCAAATTGAGCAGCAAAGGTTACACAGAAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTTATGGTTCTAGTTTCGTGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTATGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCCGAGTCATCAGCCATCACCGCGCCAGGCTTGCTACTCCCATTCGCACAGTTCAAAAAAGTTACAGAGGGGCTGACTTGGATGTATCTTTTTTTGCTGATACCATCATCTCGCAATCTACGGCAGCTAATGATGGTCCTCTCCTACTCATTGAACCGTCACGTAAGATGAGCAGTGATGACAAAGTGAAGACCTTCCCTCGATCCACGAGTTCAGACGAAGAAAAAGAAGCCGAGCAAGAAGCAGCATCCACAACTGATATGAATGCCTCCGACAAGGCTGGATCGTCATCAAATCATGAAGCCGAAAAAGACGATAGAAGTGCAGAAAAGCCATCGGAGACTCAGACCCAGAACCCACGCCCTGATACTTCAGAGAGAATTCCTGAAATGCCAGTGGCGAAGAACGGAGCGAGAGAAAAAGAGGATGAGAGTATGGTGATCAAGTCCATCAACACTACCCCTAAAGGAGTGACATCGGAGAAGTCCTGGGCTGTTTTGCCGGCATCAGACAGTGAAGAAATGGCATCTATTAGTGTGCGTATGAAGGAAGATGGCGAAAAGGGTACTGTGTCGACTGCAATATCATTGCCTCCATTGGAAGAGAACATACTTCTAGGTATTGCTTTGGAAGGGTCGAAAAGAACACTTCCAATCGAGGAAGAAACTCCTTCAATGTTTGAATCAAGAGAAATATCTGCCCATCAAACTCCACGTTCCCAAATTAGCACGGAAGCTAAAGACGCTCAGGTACCAGCAGTTCCTGGTGCGACCCAAAATGCTTAA 1644 43.8 MVPGGGSGTSILKSATLILTRALEPLVLPSDVSQAIKQRLLYFVKSLSTMLAFAYCLSSLIQQAQKFFIETNDSGEARNMGFDFAGKTVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSHLAISHFDINKINNVVADMRKVLAKNPQIEQQRLHRRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKSYRGADLDVSFFADTIISQSTAANDGPLLLIEPSRKMSSDDKVKTFPRSTSSDEEKEAEQEAASTTDMNASDKAGSSSNHEAEKDDRSAEKPSETQTQNPRPDTSERIPEMPVAKNGAREKEDESMVIKSINTTPKGVTSEKSWAVLPASDSEEMASISVRMKEDGEKGTVSTAISLPPLEENILLGIALEGSKRTLPIEEETPSMFESREISAHQTPRSQISTEAKDAQVPAVPGATQNA 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21321220 21326215 - Bma001715.1 Bma01g01375 75892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01375 547 MobiDBLite consensus disorder prediction 514 547 - -
Bma01g01375 547 SUPERFAMILY Sm-like ribonucleoproteins 130 200 IPR010920 -
Bma01g01375 547 Pfam Mechanosensitive ion channel 87 294 IPR006685 GO:0016020|GO:0055085
Bma01g01375 547 Gene3D - 39 144 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 341 368 - -
Bma01g01375 547 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 14 537 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 419 433 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 515 533 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 383 398 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 338 451 - -
Bma01g01375 547 Gene3D - 146 201 IPR023408 -
Bma01g01375 547 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 14 537 IPR045042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01375 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01375 Bma-Chr1:21321220 Bma02g00115 Bma-Chr2:1054805 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01199 . 109 558 Mechanosensitive Ion Channel Family AT4G00290 57.0 4.0e-130 461.8
Bma06g01198 . 191 453 Mechanosensitive Ion Channel Family AT4G00290 55.8 1.6e-78 290.4
Bma02g00115 . 256 813 Mechanosensitive Ion Channel Family AT5G10490 58.3 3.5e-169 592.0
Bma01g01375 . 11 511 Mechanosensitive Ion Channel Family AT5G10490 59.5 3.5e-153 538.9
Bma02g00115 . 257 796 Mechanosensitive Ion Channel Family AT1G58200 55.7 4.8e-158 555.1
Bma01g01375 . 11 518 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-150 528.5
Bma12g00910 . 63 921 Mechanosensitive Ion Channel Family AT1G53470 54.2 2.9e-248 855.1
Bma03g00619 . 73 896 Mechanosensitive Ion Channel Family AT1G53470 55.9 6.0e-246 847.4
Bma12g00910 . 63 924 Mechanosensitive Ion Channel Family AT3G14810 52.6 3.0e-234 808.5
Bma03g00619 . 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.6 2.1e-227 785.8
Bma12g00910 . 63 922 Mechanosensitive Ion Channel Family AT1G78610 60.9 2.1e-280 961.8
Bma03g00619 . 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 2.5e-260 895.2
Bma12g00910 . 228 918 Mechanosensitive Ion Channel Family AT2G17000 59.8 3.3e-225 778.5
Bma03g00619 . 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.9 9.6e-225 776.9
Bma04g00115 . 16 775 Mechanosensitive Ion Channel Family AT5G19520 50.2 1.4e-195 679.9
Bma04g00115 . 61 775 Mechanosensitive Ion Channel Family AT5G12080 56.1 1.2e-210 729.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01375 Bma_Chr01 FPKM 3.97561 3.965306 19.558575 20.473989 1.479724 1.989184 0.85377 56.722214 61.642853 58.52256