Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01375 ATGGTACCGGGAGGAGGAAGTGGGACTTCTATTCTAAAATCTGCTACCCTGATATTGACTAGGGCATTAGAGCCATTAGTCCTACCTTCAGACGTCAGCCAAGCTATTAAACAGCGACTTCTTTATTTTGTGAAATCATTGTCAACAATGCTTGCGTTTGCCTATTGTCTATCGAGCTTGATTCAACAGGCACAAAAGTTCTTCATTGAAACAAATGATTCTGGTGAAGCAAGAAATATGGGTTTCGATTTTGCTGGGAAAACTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTTGGTTTTTCTACGCAAAAGTGGCTGACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCGGGTCGTGAGATTTTGACAAATTTCCTTTCAAGCATAATGATTCATGCCACGAGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATTGACGGCTATGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCTCCAACAATTATCAGAGGCGATGATCGAGAAGCAGTTCATATCCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGTATCAAGTCCCATCTTGCCATCAGCCACTTTGACATCAATAAAATCAATAATGTTGTAGCTGACATGCGCAAAGTTTTAGCGAAAAATCCTCAAATTGAGCAGCAAAGGTTACACAGAAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTTATGGTTCTAGTTTCGTGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTATGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCCGAGTCATCAGCCATCACCGCGCCAGGCTTGCTACTCCCATTCGCACAGTTCAAAAAAGTTACAGAGGGGCTGACTTGGATGTATCTTTTTTTGCTGATACCATCATCTCGCAATCTACGGCAGCTAATGATGGTCCTCTCCTACTCATTGAACCGTCACGTAAGATGAGCAGTGATGACAAAGTGAAGACCTTCCCTCGATCCACGAGTTCAGACGAAGAAAAAGAAGCCGAGCAAGAAGCAGCATCCACAACTGATATGAATGCCTCCGACAAGGCTGGATCGTCATCAAATCATGAAGCCGAAAAAGACGATAGAAGTGCAGAAAAGCCATCGGAGACTCAGACCCAGAACCCACGCCCTGATACTTCAGAGAGAATTCCTGAAATGCCAGTGGCGAAGAACGGAGCGAGAGAAAAAGAGGATGAGAGTATGGTGATCAAGTCCATCAACACTACCCCTAAAGGAGTGACATCGGAGAAGTCCTGGGCTGTTTTGCCGGCATCAGACAGTGAAGAAATGGCATCTATTAGTGTGCGTATGAAGGAAGATGGCGAAAAGGGTACTGTGTCGACTGCAATATCATTGCCTCCATTGGAAGAGAACATACTTCTAGGTATTGCTTTGGAAGGGTCGAAAAGAACACTTCCAATCGAGGAAGAAACTCCTTCAATGTTTGAATCAAGAGAAATATCTGCCCATCAAACTCCACGTTCCCAAATTAGCACGGAAGCTAAAGACGCTCAGGTACCAGCAGTTCCTGGTGCGACCCAAAATGCTTAA 1644 43.8 MVPGGGSGTSILKSATLILTRALEPLVLPSDVSQAIKQRLLYFVKSLSTMLAFAYCLSSLIQQAQKFFIETNDSGEARNMGFDFAGKTVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSHLAISHFDINKINNVVADMRKVLAKNPQIEQQRLHRRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKSYRGADLDVSFFADTIISQSTAANDGPLLLIEPSRKMSSDDKVKTFPRSTSSDEEKEAEQEAASTTDMNASDKAGSSSNHEAEKDDRSAEKPSETQTQNPRPDTSERIPEMPVAKNGAREKEDESMVIKSINTTPKGVTSEKSWAVLPASDSEEMASISVRMKEDGEKGTVSTAISLPPLEENILLGIALEGSKRTLPIEEETPSMFESREISAHQTPRSQISTEAKDAQVPAVPGATQNA 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21321220 21326215 - Bma001715.1 Bma01g01375 75892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01375 547 MobiDBLite consensus disorder prediction 514 547 - -
Bma01g01375 547 SUPERFAMILY Sm-like ribonucleoproteins 130 200 IPR010920 -
Bma01g01375 547 Pfam Mechanosensitive ion channel 87 294 IPR006685 GO:0016020|GO:0055085
Bma01g01375 547 Gene3D - 39 144 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 341 368 - -
Bma01g01375 547 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 14 537 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 419 433 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 515 533 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 383 398 - -
Bma01g01375 547 MobiDBLite consensus disorder prediction 338 451 - -
Bma01g01375 547 Gene3D - 146 201 IPR023408 -
Bma01g01375 547 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 14 537 IPR045042 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01375 Bma-Chr1:21321220 Bma02g00115 Bma-Chr2:1054805 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01375 K22047 - csv:101213477 669.077