Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01389 CAGGTTATAATAGGTAATGGTATTGTTGAAGTGACGATATCAAATCCAGGAGGATACGTCGTAGGAATAAACTTCAATGGCGTCGACAATTTGCTTGAAGTTCTTAACCAAGAAAATAACAGAGGGTACTGGGACCTTGTTTGGAACATAGCAGGAGCTCAAAAAACTAAGGGAGTGTTTGATAGAATGGAGGGAACAGATTTCAAAGTAATAGTAGAAAAAGAAGAGCAGGTGGAGCTGTCTTTCACCAGAACGTGGAATTTCTCCCAGGAAGGCAGTGCAGTTCCACTTAACGTTGACAAGAGGTTTGTGCTGCTTCAAGGCTCCTCAGGCTTCTACACCTACGCCATTTACGATCACTTGAAGGAATGGCCTGCTGTTGACATTGATAATACCAGGGTTGCCTTCAAGCTCAGAAAAGACAAGTTCAAGTTCATGGCAAATGGGGATAAGAGACAAAGATACATGCCAGTTCCTGATGACAGGGAGCCGCCCAGAGGCCAGGTCCTGGCCTATCCCGAAGCCGTCCGGCTCGTCGACCCCATCGAACCCGAGTTCAGAGGCGAGGTAGTGGACGATAAGTATCAGTACTCCAGCGAAACCAGAGATGCTCGTGTCCACGGTTGGATCTCTGAGGACCCACCCACCGGATTTTGGCAAATCTCCGCCAGTGACGAGTTCCGCTCCGGTGGGCCTCTTAAGCAAATCCTTAACTCTCACGTGGGGCCTACTACTCTCTCTGTGTTTCATAGCGCCCATTATGCCGGGGCCGATATGATTATCCGAATCGGAGCAAACGAGCCGTGGAAGAAACTATACGGCCCCATTTTCTTGTACGTCAATTCTTTGTCCAATCGGAACAACTCTCTCTCTCTCTGGGAGGATGCAAAAAATCAGCTGACCAAGGAAATTAATAGTTGGCCGTATGATTTCCCGGCGTCGGAAGACTTCCCTAAGTCTGATCAACGGGGAAGCCTAAGCGGGAGATTACTAATTTCTGATTCGTATGACTTCCTTTTCTTTGGTTTATTAATACCACTCAAAAGTATTGCCCTCGCTTTATGCATAACCATCTCCTTTATCTTCGTTAAACTAGCTTTGCTCAGCTGTCTTGTCGTTTTTTGTGGCTGGACTTTTAGGTACAGACAGTATGGATTGTGGAAAAAATATGCAGATTTATATCCTCAACAAGACGTGATCTACACTGTTGGAGTTAGTGATTATTCAGTGGATTGGTTCTTCGCTCAAGTTAACAGAGAGACAGAAAACAACGCATATCAAGGAACTACTTGGCAGATTAAGTTCCAACTTGACGATGGATTCGTCAATGGAACCTATGTATTACGCTTGGCACTTGCTACTGTTCATGCTTCTGAGTTGCAGGTAAGAGTGAACGATGAGAAAGAAGAGCCTCCATTGTTTTCAACTGGAGTGATAGGGAAAGACAATACGATTGCGAGACATGGAATTCACGGGCTTTACAGGCTATTTTCTGCAGAAATTTCAGGGACAAGGCTAGTGGTCGGAAATAATACTATTTTTCTTACACAGGCCTCTTCCAACGTAAGCCCTTTTCAAGGTATTATGTATGATTATATTCGTTTAGAAGGCCCTCCTAATCTTCCCAGTTCTTCTTCACATCAACCGACATTCGAGTGA 1659 44.97 QVIIGNGIVEVTISNPGGYVVGINFNGVDNLLEVLNQENNRGYWDLVWNIAGAQKTKGVFDRMEGTDFKVIVEKEEQVELSFTRTWNFSQEGSAVPLNVDKRFVLLQGSSGFYTYAIYDHLKEWPAVDIDNTRVAFKLRKDKFKFMANGDKRQRYMPVPDDREPPRGQVLAYPEAVRLVDPIEPEFRGEVVDDKYQYSSETRDARVHGWISEDPPTGFWQISASDEFRSGGPLKQILNSHVGPTTLSVFHSAHYAGADMIIRIGANEPWKKLYGPIFLYVNSLSNRNNSLSLWEDAKNQLTKEINSWPYDFPASEDFPKSDQRGSLSGRLLISDSYDFLFFGLLIPLKSIALALCITISFIFVKLALLSCLVVFCGWTFRYRQYGLWKKYADLYPQQDVIYTVGVSDYSVDWFFAQVNRETENNAYQGTTWQIKFQLDDGFVNGTYVLRLALATVHASELQVRVNDEKEEPPLFSTGVIGKDNTIARHGIHGLYRLFSAEISGTRLVVGNNTIFLTQASSNVSPFQGIMYDYIRLEGPPNLPSSSSHQPTFE 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21823098 21828018 + Bma001734.1 Bma01g01389 75906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01389 552 Pfam Rhamnogalacturonate lyase family 1 190 IPR010325 -
Bma01g01389 552 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 377 543 - -
Bma01g01389 552 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 336 - -
Bma01g01389 552 SUPERFAMILY Galactose-binding domain-like 380 536 IPR008979 -
Bma01g01389 552 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 377 543 - -
Bma01g01389 552 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 2 336 - -
Bma01g01389 552 Pfam Polysaccharide lyase family 4, domain III 391 535 IPR029411 -
Bma01g01389 552 Gene3D - 3 295 IPR014718 GO:0030246
Bma01g01389 552 SUPERFAMILY Galactose mutarotase-like 6 283 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bma01g01389 552 CDD RGL4_C 389 536 - -
Bma01g01389 552 CDD RGL4_N 1 282 - -
Bma01g01389 552 Gene3D - 385 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01389 Bma-Chr1:21823098 Bma04g00426 Bma-Chr4:3436560 1.50E-63 dispersed
Bma01g01389 Bma-Chr1:21823098 Bma02g00119 Bma-Chr2:1127218 3.89E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01389 K18195 - jre:109014325 488.419