Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01393 AGCAGAGACGGTCTTACGACGAGACCAACTTCCGGATCCGATGAAATACAATTGCGAATTGATCCGATGCATGCGGACTTGGATGAAGAGATCACGGGGCTTTATAGCCAAGTTAGAAGATTGAGAAACGTTGCAGAAGAGATTGGGACAGAAGCAAGATTCCAGAACGATTTTCTCAATCAGTTGCAAATGACAATGATCAAAGCACAAGCAGGGGTGAAGAACAACGTACGAAAGTTGAACAAGAGCATTATCAAGAATGGATCAAACTCTGTTGTCCACGTAGTGGTGTTTGCTCTAGGCCTTTTCTTTCTGGTTTACTTCTGGTCAAAGGTGTCAAGAAAGTGA 348 43.39 SRDGLTTRPTSGSDEIQLRIDPMHADLDEEITGLYSQVRRLRNVAEEIGTEARFQNDFLNQLQMTMIKAQAGVKNNVRKLNKSIIKNGSNSVVHVVVFALGLFFLVYFWSKVSRK 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21891009 21892439 + Bma001738.2 Bma01g01393 75910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01393 115 SMART tSNARE_6 16 83 IPR000727 -
Bma01g01393 115 Gene3D - 23 83 - -
Bma01g01393 115 CDD SNARE_Qc 24 82 - -
Bma01g01393 115 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 21 83 IPR000727 -
Bma01g01393 115 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 114 - -
Bma01g01393 115 PANTHER GOLGI SNARE BET1-RELATED 1 114 IPR039897 GO:0015031|GO:0030173
Bma01g01393 115 SUPERFAMILY SNARE fusion complex 12 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01393 K08505 SFT1; protein transport protein SFT1 - mnt:21408717 182.956
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01393 Bma04g00443 CCT
Bma01g01393 Bma02g00123 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01383 Bma-Chr1:21725536 Bma01g01393 Bma-Chr1:21891009 9.60E-65 transposed
Bma01g01393 Bma-Chr1:21891009 Bma02g00123 Bma-Chr2:1155116 1.38E-72 wgd
Bma01g01393 Bma-Chr1:21891009 Bma04g00443 Bma-Chr4:3642616 3.01E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g474 . Blo12g00718 . Bda03g00468 . Bpe04g00430 Bma04g00443 . . . Cma01g01632 Cma09g00582 Car01g01240 . . Cpe06g00445 . . . . . . . . . . . . . . . Cone4ag1313 Cone7ag1256 . . . . . . . Blo18g00115 . . . Bpe14g00473 Bma01g01393 Bma02g00123 Sed05g1573 . Cmo09g00569 . . . Car09g00513 . . Bhi09g02476 Tan01g3827 Cmetu04g2784 . Hepe01g2156 Mch11g0693 . Cla11g01408 Cam11g1465 Cec11g1493 Cco11g1489 Clacu11g1626 Cmu11g1443 Cre11g1862 . . . Cme04g00253
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003483 3 1 2 4 2 0 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 2 1 1 2 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01393 Bma_Chr01 FPKM 1.664641 2.448962 0.0 0.0 48.027256 51.190632 47.557957 0.0 0.0 0.0