Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01394 ATGAGGCGTAATAGAAGTTCTCAGAATGTGGAATTCGGTGCTGGTGATGCGGAGGGCTTTAGATATGGTCATCGAACTCATTTTTCTGATTCATTTCATAAAATATTTTCAGAGATCTTCGAACATGAGACAAACAATTTTGCTTCAGATATTCAGGCAGAGCTATTGGTCTCTTTCACTGAAGCTGCAAAAGGATGCATAAAGGATTTGTCTGTCGACGCATTCATTCCTTGCAATGCTTGCTATGGAATTGGCTATCCCAATGATGCCCAAAAAGAAGTTTGTCCAATTTGTAGAGGTGTGGGGAGAGTTACTATTCCTCCATTTACATCCACATGCAACTCTTGTAAAGGATTGGGCCAAGTGATCAAGGAATATTGTGTATCCTGCCGAGGATCAGGGGTAGTTCAAGGTGTCAAGCATATCAAAGTTACAATACCTGCAGGTGTGGATTCTGGGGATACAATTCGTGTGCCAGAAGCTGGTAATAGTGGAGGCAGGGGAAGTCAATCTGGCAGCTTATTCATTAAACTGAAGGTTGCTGAGGATCTTGTATTTAAGAGAGATGGAGTGGATATTTATGTAGATTTCAACATCAGCTTTACTCAAGCTATTCTGGGTGGCAAGATCGAGGTGCCAACTTTATTAGGCAAGACTCAAATTAATATACCAAAAGGGGCTCAGGATGGACAACTGATGATCATCAGAGGCAAAGGACTGCCCAAATATGGTTTTCTTATTGACCATGGTGATCAATACGTTCGATTTCATGTGAAATTCCCTGCTGAGGTAAATGAGCGACAGCGTGCTATTTTGGAAGAGTTTGCACTGGAGGAAATGAATAATGGAAATGCCAACGCTGATGGAGGAAATTGGCTTTATCAGCAGATATCTACTGGTTGA 903 41.64 MRRNRSSQNVEFGAGDAEGFRYGHRTHFSDSFHKIFSEIFEHETNNFASDIQAELLVSFTEAAKGCIKDLSVDAFIPCNACYGIGYPNDAQKEVCPICRGVGRVTIPPFTSTCNSCKGLGQVIKEYCVSCRGSGVVQGVKHIKVTIPAGVDSGDTIRVPEAGNSGGRGSQSGSLFIKLKVAEDLVFKRDGVDIYVDFNISFTQAILGGKIEVPTLLGKTQINIPKGAQDGQLMIIRGKGLPKYGFLIDHGDQYVRFHVKFPAEVNERQRAILEEFALEEMNNGNANADGGNWLYQQISTG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21948583 21954548 + Bma001739.1 Bma01g01394 75911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01394 300 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 272 IPR008971 GO:0006457|GO:0051082
Bma01g01394 300 Gene3D - 76 138 - -
Bma01g01394 300 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 65 136 IPR036410 -
Bma01g01394 300 Pfam DnaJ central domain 78 134 IPR001305 GO:0031072|GO:0051082
Bma01g01394 300 CDD DnaJ_zf 78 134 IPR001305 GO:0031072|GO:0051082
Bma01g01394 300 Gene3D - 181 289 - -
Bma01g01394 300 ProSiteProfiles Zinc finger CR-type profile. 65 139 IPR001305 GO:0031072|GO:0051082
Bma01g01394 300 Gene3D - 48 178 - -
Bma01g01394 300 CDD DnaJ_C 135 261 - -
Bma01g01394 300 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 9 294 - -
Bma01g01394 300 Pfam DnaJ C terminal domain 51 261 IPR002939 -
Bma01g01394 300 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 9 294 - -
Bma01g01394 300 SUPERFAMILY HSP40/DnaJ peptide-binding domain 49 180 IPR008971 GO:0006457|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01394 - - - qlo:115958897 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01382 Bma-Chr1:21622124 Bma01g01394 Bma-Chr1:21948583 7.84E-131 dispersed
Bma01g01394 Bma-Chr1:21948583 Bma15g00451 Bma-Chr15:4905920 3.04E-56 dispersed
Bma01g01394 Bma-Chr1:21948583 Bma09g00856 Bma-Chr9:47575666 7.84E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01394 Bma_Chr01 FPKM 13.665838 14.478184 11.456285 12.349609 14.451979 13.830642 14.506473 12.539152 12.102875 14.748771