Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01397 ATGGTTTTTGCTCTTTCTAACGTTCAAACCCACCAAGTTATACACGTGTCTCCACGCTCTTTTACTGCAGCCAGTCCCTTCACTTTCTCTGTACTAAATCCCAATGGCCCAAACTTCAAACGCTGTTTGGCTCCTGAGAATTTCATCTTCGTCTTGTTCTTATCCGGCTGGTCTACCCAAATTTTGCTCAGAGAATCTCTCTTAAATTTACAGCAACGGAGAGACACTTGGAAAACTGGAAAGGGGTCGAAGCTTTCTTATTTGGGTAATATGGAGCGTTATGAGATTGTTAAGGATATAGGGTCTGGAAATTTTGGGGTAGCCAAGCTCGTGAAAGATAGGTGGACAAAGGAGTTTTATGCTGTTAAGTTTATAGAGAGAGGCCAGAAGGTCTTGTTTTTGCAGATAGACGAGCATGTTCAGAGGGAAATCGTGAATCATAGGTCGTTGAAGCATCCTAATATTGTGAGATTCAAAGAGGTCCTCTTGACGCCAACTCATCTGGCCATCGTAATGGAGTATGCGGCCGGAGGAGAACTCTTTGAGCGAATTTGTAATGCGGGTAGATTTAGTGAGGACGAGGCAAGGTTTTTCTTCCAACAATTGATTTCTGGGGTTAGCTACTGCCATTCGATGCAAATTTGTCATAGAGATCTTAAGCTTGAAAATACGTTATTGGATGGCAGCACGGCGCCCCGAGTGAAAATATGCGATTTTGGCTACTCAAAGGTACTTAATTTGTCGATAAATTTTAATCAATTCTTAGCTTGCTTCTTAGAAAATGAAACTATTACTATGCAGTCGGCTGTTTTCCATTCCCAGCCGAAATCCACCGTAGGAACACCGGCTTACATAGCACCTGAAGTATTATCTAAAAGAGAGTACGACGGGAAGATTGCAGACGTTTGGTCTTGTGGAGTCACCTTGTATGTGATGCTGATCGGGGCTTATCCTTTCGAAGATCCTGAAGATCCTAAAAACTTCCGAAAAACAATTGGGCGGATACTTAGTGTCCACTACACGATCCCAGATTACGTGCGTGTTTCAACGGAGTGTAAACATCTTCTGTCTCTTATATTTGTGGCAAGCCCCGAAAAGAGAATAACGATCCCGGAAATAAGAAGGCATCCATGGTTCTTGAAGAATCTTCCGGTGGAACTGGTGGAGGGGGGAAGCCGGGAGAACTACGAAGAAAACAAGCCTGCACAGAGCACAGAGGAGGTAGTTTCCATAATACAGGAGGCGAGAAAAAGTCTGCTAGTCCCTGAGCTTGGTCATGGTGGGGTTCTGATGGAAACCGGCAGCATGGAGCTTGATGACTTGGATGCTGAGCTTGAAGACGTAGAGAGCAGTGGTGAGTTTGTGTGTCCTATGTGA 1377 44.37 MVFALSNVQTHQVIHVSPRSFTAASPFTFSVLNPNGPNFKRCLAPENFIFVLFLSGWSTQILLRESLLNLQQRRDTWKTGKGSKLSYLGNMERYEIVKDIGSGNFGVAKLVKDRWTKEFYAVKFIERGQKVLFLQIDEHVQREIVNHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKVLNLSINFNQFLACFLENETITMQSAVFHSQPKSTVGTPAYIAPEVLSKREYDGKIADVWSCGVTLYVMLIGAYPFEDPEDPKNFRKTIGRILSVHYTIPDYVRVSTECKHLLSLIFVASPEKRITIPEIRRHPWFLKNLPVELVEGGSRENYEENKPAQSTEEVVSIIQEARKSLLVPELGHGGVLMETGSMELDDLDAELEDVESSGEFVCPM 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22062121 22064398 + Bma001744.2 Bma01g01397 75914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01397 458 PANTHER SERINE/THREONINE KINASE 268 451 - -
Bma01g01397 458 PANTHER SERINE/THREONINE KINASE 92 245 - -
Bma01g01397 458 SMART serkin_6 94 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01397 458 Gene3D Phosphorylase Kinase; domain 1 75 174 - -
Bma01g01397 458 Pfam Protein kinase domain 94 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01397 458 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 268 451 - -
Bma01g01397 458 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 92 245 - -
Bma01g01397 458 ProSiteProfiles Protein kinase domain profile. 94 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01397 458 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Bma01g01397 458 Gene3D Transferase(Phosphotransferase) domain 1 175 387 - -
Bma01g01397 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Bma01g01397 458 CDD STKc_SnRK2 93 378 - -
Bma01g01397 458 SUPERFAMILY Protein kinase-like (PK-like) 89 387 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01397 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - mnt:21395936 564.303
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01397 Bma02g00133 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01397 Bma-Chr1:22062121 Bma06g00296 Bma-Chr6:4289247 3.94E-174 dispersed
Bma03g00525 Bma-Chr3:4082641 Bma01g01397 Bma-Chr1:22062121 3.77E-177 transposed
Bma03g01096 Bma-Chr3:13784911 Bma01g01397 Bma-Chr1:22062121 5.06E-170 transposed
Bma05g00737 Bma-Chr5:43386444 Bma01g01397 Bma-Chr1:22062121 5.67E-140 transposed
Bma06g00547 Bma-Chr6:29162375 Bma01g01397 Bma-Chr1:22062121 1.66E-151 transposed
Bma01g01397 Bma-Chr1:22062121 Bma02g00133 Bma-Chr2:1222658 1.57E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0520 . . . . Blo17g00113 Blo18g00128 . Bda13g01394 . Bpe14g00461 Bma01g01397 Bma02g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66282 PF00069 Pkinase 5.50E-68 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01397 Bma_Chr01 FPKM 55.800167 62.921841 55.403011 54.463463 56.827015 53.085251 57.573975 45.035862 43.683346 44.170761