Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01399 ATGGACAATTCTCTACCAGAAGCGCTTGGATCTAGAGACCGTAGGCCAGGCGCTCTCGGTGAGCTACGAATTCTTCCCGATGAACTTATATGTTCCATACTGGAGTACCTCGATTCTCGAAATGTCGCCCGCTGTGCCTGCGTTAGCAGTGTTATGTATATTCTGTGCAATGAGGAACCACTCTGGATGAGTCTGTGCTTTAAAAGGGTAAATGGTCCACTTCAGTATAAAGGTTCCTGGAAGAAAACAGCTCTCCATTTAGAGAATCAAGAGGATGAATATGAAAAACCTCCCAGAATGCCATTGTATTTCGATGGTTTTAACTCTTCATTCATGTACAGAAGATTTTATAGATGCCATACTGCGTTGGATGGGTTTTATTTGGATCGGGGAGATATTGAAAGGAGAGCCAATCTTTCTTTGGAAGATTTTCATAATACATATGATGGAAAGGAACCGGTTTTACTTACTGGTTTGGTGGACACTTGGCCTGCAAAAAATACATGGTCAGTGGACCACTTCTTGTTAAAACACGGAGATAAAGCATTTAGGATTTCTCAAAGAAGTTCGAGGAAGATCTCAATGAGATTCGAAGATTATGTTTCCTATATGAAACTTCAGCAAGACGAGGATCCTTTATATATCTTTGATGATAAATTTGGAGAAGTTGCACCAGACTTGTTGAAGGATTATAATGTGCCTCATCTATTTCAAGAAGACTACTTTGATGTACTAGATAGAGATCAGCGCCCTCCATTTAGATGGCTCATTGTTGGTCCACAGAGATCTGGTGCATCATGGCATGTTGACCCGGCCCTTACCAGTGCTTGGAATACCCTTTTGTGTGGCCGTAAAAGGTGGGCACTGTATCCTCCAGGAAGAGTACCTTTGGGTGTTACCGTGAACGTAAATGATGAGGATGGTGATGTTGATATTGAGTCCCCATCATCACTGCAGTGGTGGCTAGATTTTTATCCACTTGGTGCCTGTCTTGCGCTAAATGCGGGTAAATGGCTAGAATGCGTGGGAGAAATTTGTGCCTTCTACAATCTGTCTCCTCCTACTGAAGATGAGCGGCTTCCAGTTGGCACGGGTAGCAATCCAGTTTATATGATGGATGACCGTGTCATAAAGATATTTGTTGAAGGAGGTTTGGAAGCTTCTGTTTATAGTTTAGGCACTGAGCTTGAGTTTTACAGTCTACTTCATAAAGTGAATTCCCCTCTGAAAGATCATATTCCTGATATTTTGGCTAGCGGGATTGTTTATATTGATGATGGAACTTATCAAGTTATTCCTTGGGATGGCAAAGGTGTTCCTGACTGGATCGCAAAGTGCCATCTTACTTTTGATATATGCAAAGATGATGGTTTTCCTCTGGGTATATGGAGCAAGAAAAAATTTGAATATAAAAAAGCCGGGCTGTCAATAAACGAATCGACTAGTTCAGCTTATACCGCAAAGATGTGGCCATTTATCATAACCAATCGCTGCAGTGGAAAAATATTTGCTCAGTTAAGAGAAATGTTGTCTAGAGAAGATATTCTGAACTTAGCTTCTTTTCTTGGGGAGCAGCTTCGTTATCTTCATCTCTTACCCCATCAAGATTTTATTGATCCAACTTTCGCAGATGTTAATCATAAGTTACTCTTGTCCTCCACTGAAAGTTCTCTTGAAGCCATATCTGATGGAGCAAATATTTCAACTAGATGGGATATTTTCGTTGGAATTCTTAGAAGGAAAAGAAAGGATGTTATAAGTCGCCTGAAAAAATGGGGAGATTTCATTCCTAACACATTGTTGCAGAAAGTTGAAGAATATATACCTGATGATCTTGGGACTTTGCTTGACGTATTTGAGGATGAAAGTGGACTTAACAAAATCTGGGACGGATACTCATGGATACATTCAGACATTATGGATGACAACATTCAAATGGAGCCATTTTTGTTTGAATGTTGCCCAGACAGTAACGTTGAAGGCAGTGATTCCATTAAGGGTTATAATGGTTGTGGAAAGAGAAAAGCCTGGCGACCTAGCTACATTCTTGATTTCAGCGATTTGTCCATTGGTGATCCACTTTGTGATTTGATTCCCATATACCTGGATGTATTTAGAGGTGACACCACTCTCCTCAAGCAATTCTTGGAAAGCTATAAACTTCCTCTAGTGAGAAGATCACCACAGCATGATCCCGAAGCTAACAAGTTTGGGCGGCTTTCCTACCGTGCTATGTGCTACTGTATTTTGCACGATGAGAACATAATGGGAGCCATTTTAAGCTTATGGGAAGAGCTCAAAACAGCAGATTCCTGGGAAGAAATCGAGCTGACAGTGTGGGGAGAGTTGAACAACTACAAAGGTTTTGCTTAA 2373 40.96 MDNSLPEALGSRDRRPGALGELRILPDELICSILEYLDSRNVARCACVSSVMYILCNEEPLWMSLCFKRVNGPLQYKGSWKKTALHLENQEDEYEKPPRMPLYFDGFNSSFMYRRFYRCHTALDGFYLDRGDIERRANLSLEDFHNTYDGKEPVLLTGLVDTWPAKNTWSVDHFLLKHGDKAFRISQRSSRKISMRFEDYVSYMKLQQDEDPLYIFDDKFGEVAPDLLKDYNVPHLFQEDYFDVLDRDQRPPFRWLIVGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVNVNDEDGDVDIESPSSLQWWLDFYPLGACLALNAGKWLECVGEICAFYNLSPPTEDERLPVGTGSNPVYMMDDRVIKIFVEGGLEASVYSLGTELEFYSLLHKVNSPLKDHIPDILASGIVYIDDGTYQVIPWDGKGVPDWIAKCHLTFDICKDDGFPLGIWSKKKFEYKKAGLSINESTSSAYTAKMWPFIITNRCSGKIFAQLREMLSREDILNLASFLGEQLRYLHLLPHQDFIDPTFADVNHKLLLSSTESSLEAISDGANISTRWDIFVGILRRKRKDVISRLKKWGDFIPNTLLQKVEEYIPDDLGTLLDVFEDESGLNKIWDGYSWIHSDIMDDNIQMEPFLFECCPDSNVEGSDSIKGYNGCGKRKAWRPSYILDFSDLSIGDPLCDLIPIYLDVFRGDTTLLKQFLESYKLPLVRRSPQHDPEANKFGRLSYRAMCYCILHDENIMGAILSLWEELKTADSWEEIELTVWGELNNYKGFA 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22078475 22088366 - Bma001747.2 Bma01g01399 75916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01399 790 Pfam Cupin-like domain 146 296 IPR041667 -
Bma01g01399 790 ProSiteProfiles JmjC domain profile. 222 368 IPR003347 -
Bma01g01399 790 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 326 - -
Bma01g01399 790 SUPERFAMILY Clavaminate synthase-like 132 327 - -
Bma01g01399 790 Gene3D - 20 96 - -
Bma01g01399 790 SUPERFAMILY F-box domain 17 82 IPR036047 GO:0005515
Bma01g01399 790 PANTHER - 328 571 - -
Bma01g01399 790 PANTHER - 12 326 - -
Bma01g01399 790 Pfam F-box-like 24 68 IPR001810 GO:0005515
Bma01g01399 790 Gene3D Cupin 125 344 - -
Bma01g01399 790 SMART fbox_2 25 65 IPR001810 GO:0005515
Bma01g01399 790 ProSiteProfiles F-box domain profile. 19 65 IPR001810 GO:0005515
Bma01g01399 790 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 328 571 - -
Bma01g01399 790 SUPERFAMILY Protein kinase-like (PK-like) 486 722 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01399 - - - vvi:100242134 599.356
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01399 Bma-Chr1:22078475 Bma11g00887 Bma-Chr11:33379625 4.10E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g437 . . Bda01g00890 . . . . . Cmo05g00532 . . . . . Sed04g0156 . . Bhi04g00774 Tan02g2406 Cmetu03g2077 . Hepe10g0484 . Lcy13g1550 Cla08g01121 Cam08g1577 Cec08g1147 Cco08g1274 Clacu08g1278 . Cre08g1059 . . . Cone20ag0518 . . . Cme03g01854 Blo17g00114 Blo18g00129 . . Bpe02g01126 . Bma01g01399 . . . . . Cma05g00505 Car05g00455 . Cpe11g00445 . . . . . . . . . . . . . . . Lsi08g00977 Csa02g02161 Chy03g01356 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008506 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01399 Bma_Chr01 FPKM 3.113288 3.763531 4.121134 5.503279 4.816287 3.911551 5.697115 5.422594 4.840647 5.867916