Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01408 ATGGACCCAAAGAAAGCGGTGGAGATGGTCGACGAGAACACCATCTGCGTCGCTGCAATTCTGGGTTCTACTCTAAACGGAGAATTCGAGGACGTCAAACTCTTGAACGATCTCTTGATCCAGAAAAACAAGCAAACTGGATGGGATACTCCTATTCACGTAGATGCTGCAAGCGGAGGGTTCATTGCTCCATTTCTTTACCCAGAGCTTGAGTGGGATTTCAGGCTGCCATTGGTGAAGAGCATTAACGTCAGCGGCCATAAATACGGACTCGTTTATGCCGGAATTGGATGGGTTATTTGGAGAAGCAAAGAGGATTTGCCTGAAGAACTCATTTTCCATATCAACTATCTTGGAGCAGATCAACCAACTTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCCCAGTATTACCAGCTTATTCGCTTAGGATACGAGGGATATAGAAATGTCATGGAAAATTGCCGAGAAAACGCGATAGTGCTCAGAGAAGGACTGGAAAATACGGGACGTTTCACCATAGTCTCCAAAGATGACGGAGTCCCACTAGTTGCTTTCTCTCTCAAAGACAACAGCTGCCACAACGAGTTTGAAATCTCCGAAATGTTGAGGCGCTTTGGGTGGATAGTCCCGGCCTACACCATGCCAGCCGATGCACAACACATAACAGTGCTAAGGGTTGTAATACGTGAAGATTTTTCTCGCACACTCGCTGAACGCCTGGTCTTTGATATCGAAAAAGTTTTGCATGAACTCGACACCCTTCCAGCGCGAGTGGTTACGACTAAATTAGAAGCCACTAAATTAGAAGTCAGTAAGGAAACGGCCCCAGAGAGTGGGACTGTAACTGTGATCATTAAGAAGAGCAACGAGGAGGTCGAGAGGGAGGTGTCTACGATTTGGAAGATGTTTGTGGCTAATAAGAAGAAGAAGAATGGTGTCTGCTAG 957 46.19 MDPKKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLIQKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRENAIVLREGLENTGRFTIVSKDDGVPLVAFSLKDNSCHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVFDIEKVLHELDTLPARVVTTKLEATKLEVSKETAPESGTVTVIIKKSNEEVEREVSTIWKMFVANKKKKNGVC 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22315961 22317934 - Bma001758.1 Bma01g01408 75925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01408 318 Gene3D - 1 171 IPR015421 GO:0003824
Bma01g01408 318 SUPERFAMILY PLP-dependent transferases 1 255 IPR015424 -
Bma01g01408 318 Gene3D - 172 259 - -
Bma01g01408 318 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 192 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bma01g01408 318 PANTHER GLUTAMATE DECARBOXYLASE 1 318 - -
Bma01g01408 318 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 255 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma01g01408 318 PANTHER GLUTAMATE DECARBOXYLASE 1 318 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01408 Bma-Chr1:22315961 Bma02g00560 Bma-Chr2:11649214 0 dispersed
Bma01g01408 Bma-Chr1:22315961 Bma02g00148 Bma-Chr2:1309261 4.91E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01408 K01580 - pvy:116131519 538.11