Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01425 ATGGCGGATCAGGAGGATGAAGATTTTCGAATGGCCTTGAGGATGAGTATGCAGCAGCACTCTCTACCTGAGCCCAAGCGAAGCAAGCCAACGGATTTTCTTATTGGAGCTCCTACTGACTCGACGGACGAGTCGTCGGAGGTGAAGACTCGACGGATGCAGAGGGAACTTATGGCTGCTGCTGCTGAGAAGCGGATGCTTGCTTCTAAGAGCGCCACAACCTCGGTAGCAGCAGTAATTCGTTCGCCCTTCAAGGTGGAGAATAAAGAGAGGGAATTGAGCGTGGAAGGTATGAATTTGGGGACGAAGCTCTCTGCAAAGGAAGTAAACCAGTTGTTTTCAATGGTGTTTGGGTCTGAAGTGTCAAAGGACATTCTCGTGCAATGGAGTAATCAAGGCATAAGGTTCAGCCCTGATCCTGAGACATCTATGGGTCTAGTACAGCATGAAGGTGGGCCTTGTGGCGTTCTAGCTGCTATTCAAGCATACGTCATCAAGTACCTCCTTATCCTCCCAGAAGAATTAAAAAATGTTGCTCAAACACCAAGTTTGTCTAAAACCTTTGGCAGGGAGAGATTGTTTAAATGCCAAGGCGCTGTAAAAACTGATTTTGCTTCTCTTACCGAAGATGCGAAAGCGAGAGCTTTGGTCAGAAGCATGGGTGAGATTTTGTTTTTATGTGGAAATAATGAAACGGCCGCTGTTGCAACTTTGAGTGTTACAGACCACGGATGTATGGGATCTGAAAACAGCATCAAGGAGGAAATCATTGCAAAAGCACTTGATGGTCTTTCAATTGGATCAGCGGCTGCTTTGCAGAAAGTGCTGAGGGTTCAGATATTCAAATCGCAAGCAATTGCCTTTCAGAGGATTCAGGAGCTCCTCCCAGTTTTCGAAAGTCGTATGGGTGCACTGCTATTCCTGATTTCTGCTTTACTTTCTAGAGGACTGGATATGGTTCAAGGTGACAGGGATGATCCAAGCCTCCCACTAGTCACTGCTCCATTTGGACATGCCTCACAGGAAATTGTAAACTTGCTGCTCTGCGGGCAGGCAGTCCCGAATGTATTCGATGGAAGGATGGATTTAGGCAGTGGAATGTGTCTGAGAGGCATATCTACAAGCGTTGAAGTTGGCTTCCTTTCTCTGCTAGAATCACTTAATTTCTGTAAGGTTGGCCAAAATTTGAAATGCCCAAAATGGCCAATATGGGTTGTTGGGAGTGAATCCCACTACACAGTCCTCTTTGCTCTTGATTCCACTGTTCAGGATGAGAACGAGTTAGAAGAAAGACAATCACAGATTAGAAAAGCTTTCGACGGCCAAGATCAAAGCGGAGGTGGCGGTTTCATCAGCGTCGAAGGCTTTAATCAAGTTCTCAAAGAAACATCTTTAAAACTTCCATCCGAGAAATTCGATCGCCTTTGCAGCACAGGATTTATCGTATGGAGCGAGTTCTGGCAGGTAATTTTGGAGTTGGACAAGAGCTTGGGAGGATTAAATGACTCGACAGGAATGATGGGTAAGAAAATTTTTGATCTTTATCACTTTAATGGCATTGCCAAGTCAGATTTGAATGGCAGCCAACCCACCACTGGATTTGAAAATCCAGTTCAAAGACCTCGGCTCAGTAAGCTCAAGGTTTCAGTCCCCCCAAGATGGACACCTGAGGAGTTCATGGCAGATGAGTCGACTGAGAAAAACGTCGAAGTAGCAAAACCCGAACCTCCTCAACATGCCCCTCTGGTAGACTGCATAAGAACTCGATGGCCTCGAGCGATATGCAACTGGGCAGGGCATCCCCCAAGCATAGTTTGA 1818 46.26 MADQEDEDFRMALRMSMQQHSLPEPKRSKPTDFLIGAPTDSTDESSEVKTRRMQRELMAAAAEKRMLASKSATTSVAAVIRSPFKVENKERELSVEGMNLGTKLSAKEVNQLFSMVFGSEVSKDILVQWSNQGIRFSPDPETSMGLVQHEGGPCGVLAAIQAYVIKYLLILPEELKNVAQTPSLSKTFGRERLFKCQGAVKTDFASLTEDAKARALVRSMGEILFLCGNNETAAVATLSVTDHGCMGSENSIKEEIIAKALDGLSIGSAAALQKVLRVQIFKSQAIAFQRIQELLPVFESRMGALLFLISALLSRGLDMVQGDRDDPSLPLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDLGSGMCLRGISTSVEVGFLSLLESLNFCKVGQNLKCPKWPIWVVGSESHYTVLFALDSTVQDENELEERQSQIRKAFDGQDQSGGGGFISVEGFNQVLKETSLKLPSEKFDRLCSTGFIVWSEFWQVILELDKSLGGLNDSTGMMGKKIFDLYHFNGIAKSDLNGSQPTTGFENPVQRPRLSKLKVSVPPRWTPEEFMADESTEKNVEVAKPEPPQHAPLVDCIRTRWPRAICNWAGHPPSIV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24198923 24205897 - Bma001793.1 Bma01g01425 75942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01425 605 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 4 23 IPR003903 -
Bma01g01425 605 MobiDBLite consensus disorder prediction 14 49 - -
Bma01g01425 605 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 115 430 IPR025257 -
Bma01g01425 605 PANTHER UNCHARACTERIZED 3 604 IPR039785 GO:0004843|GO:0071108|GO:1990380
Bma01g01425 605 SMART DUF4205_3 113 485 IPR025257 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01425 K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:3.4.19.12] - jre:109011423 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01425 Bma-Chr1:24198923 Bma02g00149 Bma-Chr2:1319644 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006024 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 2 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01425 Bma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.989032 0.0