Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01429 ATGAGGCGCCATTCCAGGCATCAATCGGATCTCTTCTGGCCCAAACTTGTTTTGCGTAAATGGCTCAATATCAGTGCCAAAGAGTCAGATTTCAGCGCTGACACCGAGGACGATGACGATGCTGATTCTGGTTCAGAAACTGAAGATGATCAATGGGGAAAGAAATCTCGCTTCGCAATGGACAGAGGAGACGATCCTCAGGTTGATGCTAATGATGCACTGCCAAGGTTAAGAAGACGAAAATCAGAAACTTTTAGAACACAGTACATAAACACCAAAGAACTCAGAATATGTGTTGGGACTTGGAATGTCGGAGGTAAAACTCTGTCTGATGAACTAGATATTGACGATTGGCTAGATATCACTGAACCAGCTGACATCTATGTCCTTGGGCTTCAGGAGATTGTTCCACTGAATGCTGGGAACATACTTGGCGCTGAAGATAGTAGGCCAGTACCAAAGTGGGAAAGCATTTTTCGAGAGACATTAAATAGAGTTAGGCCAAGAACCAAAATTAAAAGCTTAACTGACCCCCCATCTCCGTCAAAGTTTATGCCATCCGCTGAAAATCCAAGTTTTGAAGAGGATTTTTTGCATGAAAGTGATAGTGATATCGGTGAGGAAGTTCATCCTTTTGATGGAGAATTTTCTGAATTTGAAGAAGTGAAAGATAAAGCAACACTGGATCAAACCATCTGCACTAAGGATGGAGGAAGTCCTGACAGTACAAAGATCCACTTAAGCACTTTGGTATCACAGGATTTACAGAGACAATGTTCTTCTCCTAAAATGTTGAATAGATTAAATTGCCTTAGGACTGAGGATTGGACTGAAAATAATGAAGTATTCATCTCTCAAAAAAATGGAAAATTATCCAGAATGCTTAGTGGGTCAGAAAGAATTGGTTTGTCATGGCCGGAGCGTCCACTAAACTTGCTATCCAGACATGTTCTAGAGAGACCTGATTCCTTCAAATCCGTAAAATGGTTCCAACCATCAAAATCCTCTGGAACATTTAATTCTTTCAAGTCAATTAATGAAGCGACATCACAACTGGCTTTGCTTGCAGACATTGACCTCGAGTCACTCCTCAAGAAGAAAAGACGTTCATCGTATGTTAGGATCATAAGCAAACAGATGGTTGGTATTTTCCTCTCGATATGGGTCCGTAGGAGCTTGCGTAGGCATATCCGAAACCTTAAAGTTTCTACTGTTGGTGTTGGTGTCATGGGTTATATTGGTAACAAGGGATCGGTCTCAGTTAGCATGTCTATATATCAGACACCATTTTGTTTCATATGCACTCACCTGACAGCAGGTGAAAAAGATGGAGACGAACTTAAAAGAAACGCTGATGTGAATGAAATACATAGGAGAACTCAATTTTATGCACTCTCTGGTGTTGGACTTCCAACAACAATCCATGAACACGAGAAAATTATTTGGCTGGGAGATTTGAATTACCGTATTAATTTGTCATACAAGAAAACTCGAGAACTTATCTTAAAAAAGGAGTGGTCAAAATTAATTGAGAACGATCAGCTCGTAAAAGAACTTAAGAAAGGTCGTGTATTTGATGGTTGGTCTGAAGGCACTTTAAACTTCCCACCAACATATAAATATGAAACTAACTCAGAGAAGTATATTGGAGATGATCCTAAAGCTGGGAGGCGAACACCAGCCTGGTGTGACCGTGTACTCTCGTATGGCAAGGGACTGAAGCTATTGAGCTATAGAAGGACTGAGATTAAATTCTCTGATCACCGACCTGTGACCGCCACCTTCATGGCCGAGGTTGAGGTGTTTTGTCTGCGGAAGCTACAGCGTGCTCTTACTTTCACTGATGCAGAGATTGAACAAGATGGAGTCGTTACCGATTTAGATTTTAATAATAGGTATTAA 1902 40.9 MRRHSRHQSDLFWPKLVLRKWLNISAKESDFSADTEDDDDADSGSETEDDQWGKKSRFAMDRGDDPQVDANDALPRLRRRKSETFRTQYINTKELRICVGTWNVGGKTLSDELDIDDWLDITEPADIYVLGLQEIVPLNAGNILGAEDSRPVPKWESIFRETLNRVRPRTKIKSLTDPPSPSKFMPSAENPSFEEDFLHESDSDIGEEVHPFDGEFSEFEEVKDKATLDQTICTKDGGSPDSTKIHLSTLVSQDLQRQCSSPKMLNRLNCLRTEDWTENNEVFISQKNGKLSRMLSGSERIGLSWPERPLNLLSRHVLERPDSFKSVKWFQPSKSSGTFNSFKSINEATSQLALLADIDLESLLKKKRRSSYVRIISKQMVGIFLSIWVRRSLRRHIRNLKVSTVGVGVMGYIGNKGSVSVSMSIYQTPFCFICTHLTAGEKDGDELKRNADVNEIHRRTQFYALSGVGLPTTIHEHEKIIWLGDLNYRINLSYKKTRELILKKEWSKLIENDQLVKELKKGRVFDGWSEGTLNFPPTYKYETNSEKYIGDDPKAGRRTPAWCDRVLSYGKGLKLLSYRRTEIKFSDHRPVTATFMAEVEVFCLRKLQRALTFTDAEIEQDGVVTDLDFNNRY 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24253914 24258404 + Bma001798.1 Bma01g01429 75946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01429 633 MobiDBLite consensus disorder prediction 30 72 - -
Bma01g01429 633 SUPERFAMILY DNase I-like 84 608 IPR036691 -
Bma01g01429 633 MobiDBLite consensus disorder prediction 47 72 - -
Bma01g01429 633 Gene3D Endonuclease/exonuclease/phosphatase 73 178 IPR036691 -
Bma01g01429 633 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 11 625 - -
Bma01g01429 633 Pfam Endonuclease/Exonuclease/phosphatase family 398 588 IPR005135 GO:0003824
Bma01g01429 633 MobiDBLite consensus disorder prediction 32 46 - -
Bma01g01429 633 Gene3D Endonuclease/exonuclease/phosphatase 327 623 IPR036691 -
Bma01g01429 633 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 11 625 IPR045849 GO:0004445|GO:0046855
Bma01g01429 633 SMART i5p_5 278 603 IPR000300 GO:0016791|GO:0046856
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01429 - - - csv:101220281 870.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01429 Bma-Chr1:24253914 Bma02g00832 Bma-Chr2:45215652 2.33E-24 dispersed
Bma02g00581 Bma-Chr2:12626959 Bma01g01429 Bma-Chr1:24253914 2.63E-33 transposed
Bma12g00225 Bma-Chr12:2952905 Bma01g01429 Bma-Chr1:24253914 2.18E-159 transposed
Bma14g00909 Bma-Chr14:10259817 Bma01g01429 Bma-Chr1:24253914 2.12E-33 transposed
Bma01g01429 Bma-Chr1:24253914 Bma02g00152 Bma-Chr2:1336761 6.14E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01429 Bma_Chr01 FPKM 16.896654 15.774858 17.334419 16.75036 15.071232 18.963055 15.930079 21.073462 18.157261 20.165216