Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01432 ATGTTATTGGCAGTCGAAGGAGGAGGGTTCTTCTCTTCTTCAGCTTCTGGATATAGCACGGGTATAGCCCTTCTTCTCTTGGGTAAGAAGAACAAAGACGAACACATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACGAAGAACCCAACCCTGACCTTCAGCTGGCTTCAACGAAGAACCAGATTTCCAGGGGGTGCGCCTCCTTTGTCTGCTTTGGTCGCAATTCCGCAGGGCTTAACCCACCAGCAACTCTCAAAGTGGGTCCTAGCCGGCAGCTGGATATTTTGCCAGGAAATCTTGTTTCAGATAAAGGCAAAGACCATATTTCTGTGCTAGATGATGTTAATGCTGTAAGAAAGATGGCTCTTAAAAGTAGCTTGAAGAAGCCACTGAATGGTACATCTTCTTCTGTTAATGCGGATGTTTATGAAGCATTTGCGGAAAAGGATATTCATATTTCTGGCCATACGGAAAGAAGGAAAATACAGTGGATAGATGCTTGTGGGAGTGACCTCGTTGAAGTCAGGGAGTTTGAACCCAGGCATGTTATCTTTCTTACTATTATTCTATTTCAAAACTTCTTGAGAAGTGCTATTTCTGTTGGCCAAGTTCCTTTTTTTTTGGATGTCTTTTTCAGACGCGGTATTATTTTCATCGTTTTTAAAAAAAAAATTATAGGAATACTACTTACTCACAATATGATAATTGGAAATTATCTTATTTTGCGTAATGAATTATACTCGTATTGA 756 40.87 MLLAVEGGGFFSSSASGYSTGIALLLLGKKNKDEHMRVSPWNQYQLVDEEPNPDLQLASTKNQISRGCASFVCFGRNSAGLNPPATLKVGPSRQLDILPGNLVSDKGKDHISVLDDVNAVRKMALKSSLKKPLNGTSSSVNADVYEAFAEKDIHISGHTERRKIQWIDACGSDLVEVREFEPRHVIFLTIILFQNFLRSAISVGQVPFFLDVFFRRGIIFIVFKKKIIGILLTHNMIIGNYLILRNELYSY 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24353923 24354678 + Bma001804.2 Bma01g01432 75949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01432 251 PANTHER LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC 1 182 - -
Bma01g01432 251 PANTHER LOW AFFINITY POTASSIUM TRANSPORT SYSTEM PROTEIN 1 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01432 - - - twl:119992479 237.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02518 Bma01g01432 CCT
Bma01g01432 Bma02g00155 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01432 Bma-Chr1:24353923 Bma01g02518 Bma-Chr1:82824421 5.41E-67 dispersed
Bma14g00736 Bma-Chr14:8123821 Bma01g01432 Bma-Chr1:24353923 2.40E-07 transposed
Bma01g01432 Bma-Chr1:24353923 Bma02g00155 Bma-Chr2:1376219 1.48E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1341 Blo01g01740 Blo12g00776 . . . . . Bma01g02518 Cmo04g02573 Cmo15g00588 . Cma09g01193 . . . . Cpe13g00695 Bhi04g02163 . . . . . . Cla08g00315 Cam08g0751 Cec08g0301 . Clacu08g0464 . . . . . . . . . Cme03g00294 Blo17g00135 Blo18g00147 . Bda13g01419 . Bpe14g00438 Bma01g01432 Bma02g00155 . . Cmo09g01215 . . Car04g02366 Car15g00540 Cpe01g02128 . . . . . . . . . . . . . . . Lsi08g00257 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005768 2 1 4 3 3 1 1 1 1 0 1 2 1 0 0 1 1 4 1 1 0 1 1 1 1 1 0 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01432 Bma_Chr01 FPKM 25.046633 27.584341 12.833452 11.636249 21.524717 24.307217 19.859589 17.038498 18.036318 18.268841