Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01436 ATGCTTCGTGCAAAAAATCAGGCTCTCATCCAAATGCAAGATATTCCTTCTGCAGTCAATGCTTTACAATTCTATGCAAATGTTCAACCGACCATAAGGGGAAGAAATGTTTATGTTCAATTCTCATCTCATCAAGAACTTACTACAATGGAGCAAAATACTCAAGGACGAGTTGACGAGCCAAATCGTATTCTCTTAGTCACAATCCATCATATGCTATATCCAATAACTGTGGACGTGCTTCATCAAGTGTTTTTCCCTCATGGATTTGTGGAAAAGATGGTCACATTTCAGAAGTTAGCTGGTTTTCAGGCCCTCATTCAGTATCAATCACGGCAAAGCGCTATCTCCGCCAGAACTGCACTGCAGGGGCGTAATATCTACGATGGTTGCTGTCAACTGGACATTCAATTCTCCAATCTAGATGAGCTACAAGTAAATTACAACAATGATCGATCTAGGGATTTTACAAACCCAAACTTACCCTCTGAACAAAGAGGCAGATCCTCCCAGCCTGGGTATGGTGATGCAGGAGGAATGTATGGCGTTCAATCACCAGGTATGGCCAATGCTGCTGCAGTTGCAGCTGCCTTTGGAGGAGTTTTGCCTCCTGGTGTAAGTGGGACAAATGACAGGTGTACGATTCTTATTTCAAACTTCGATCCTGATAGAATAGATGAGGATAAGCTCTTCAACTTATTCTCCATATATGGCAACATTGTAAGAATTAAACTCCTCCGAAATAAACCAGATCATGCACTGGTTCAGATGGGAGACGGGTTCCAGGCTGAATTAGCAGTTCATTTCCTAAAGGGAGCCTTGTTGTTCGGAAAACTACTGGAAGTAAACTTCTCGAAGTATCCAAATATTACTCAAGGAGCCGATACTCATGAGTATGTAAATTCAAATCTAAACCGCTTCAATCGAAATGCTGCAAAGAACTACAGGTACTGCTGTTCCCCAACAAAGATGATCCATATTTCCTCCCTCCCCCAAGAAGTCACTGAGGAGGAGATTGTGAACCTCCTTGAGGAGCATGGCAGCATTGTCAACACCAAGCTATTTGAGATGAATGGAAAGATTCAGGCCTTGGTTATGTTTGAAACTGAAGAGCAGGCCACTGAAGCCCTTGTCTGCAAGCACGCCACCTCAATTGGCGGCTCTATTATGCGGATTTCCTTTTCCCAATTGCAGGGAATCTAA 1203 43.06 MLRAKNQALIQMQDIPSAVNALQFYANVQPTIRGRNVYVQFSSHQELTTMEQNTQGRVDEPNRILLVTIHHMLYPITVDVLHQVFFPHGFVEKMVTFQKLAGFQALIQYQSRQSAISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPSEQRGRSSQPGYGDAGGMYGVQSPGMANAAAVAAAFGGVLPPGVSGTNDRCTILISNFDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKLLEVNFSKYPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTEEEIVNLLEEHGSIVNTKLFEMNGKIQALVMFETEEQATEALVCKHATSIGGSIMRISFSQLQGI 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24452987 24456768 - Bma001810.1 Bma01g01436 75953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01436 400 Gene3D - 210 305 IPR012677 -
Bma01g01436 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 388 IPR000504 GO:0003723
Bma01g01436 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 287 IPR000504 GO:0003723
Bma01g01436 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 298 - -
Bma01g01436 400 Pfam RRM-like domain 62 139 IPR021790 -
Bma01g01436 400 SUPERFAMILY RNA-binding domain, RBD 60 162 IPR035979 GO:0003676
Bma01g01436 400 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 399 - -
Bma01g01436 400 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676
Bma01g01436 400 Gene3D - 1 62 IPR012677 -
Bma01g01436 400 Gene3D - 306 399 IPR012677 -
Bma01g01436 400 CDD RRM4_PTBPH3 316 394 - -
Bma01g01436 400 SUPERFAMILY RNA-binding domain, RBD 2 55 IPR035979 GO:0003676
Bma01g01436 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 397 IPR000504 GO:0003723
Bma01g01436 400 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 399 - -
Bma01g01436 400 Gene3D - 63 166 IPR012677 -
Bma01g01436 400 MobiDBLite consensus disorder prediction 152 177 - -
Bma01g01436 400 MobiDBLite consensus disorder prediction 152 170 - -
Bma01g01436 400 SMART rrm1_1 214 283 IPR000504 GO:0003723
Bma01g01436 400 SMART rrm1_1 324 393 IPR000504 GO:0003723
Bma01g01436 400 SMART rrm1_1 66 135 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01436 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - jre:108984238 709.138
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01436 Bma02g00160 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01436 Bma-Chr1:24452987 Bma14g01997 Bma-Chr14:43280112 2.49E-07 dispersed
Bma01g01436 Bma-Chr1:24452987 Bma02g00160 Bma-Chr2:1417473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01436 Bma_Chr01 FPKM 0.667933 0.988153 0.0 0.372035 2.585389 2.400891 2.614408 1.594782 1.52971 1.794817