Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01441 ATGGCCATGGTCTTAGACTCGCACATAGAGAAGGTTTTATGGACGAAGGAACAAATCTCGGATCGGGTCACTGACCTGGCAGCGGAAATCTCACTCGAATTTGCCTCCGTCTCTACCCCTCCTGTTCTTGTCGGAGTGGCCACCGGCGCCTTCCTCTTCTTTGCCGATTTGGTTCGCCTTATCCAACTTCCAATTGCCGTCGATTTTATTCGTGTTGATTCCTATGGTTCCGGAACGGAATCGAGCGGCACGCCTTTTATCTCTTCCGACTTGAAGCTTGATGTCAGTGGCAAACATGTCATTCTGGTTGAAGATATCGTAGATACAGGAAGGACTTTGTCTTTCCTTATTGAACATTTTGAGGCAAAAGGAGCATTGTCTATATCAATATGCACATTTCTTGACAAACCAGAGAGGCGGGAGGTTCATTTTCAGCCTTTTGGTGAGGGAAAGTTATACCGAGGCTTCAAATGTCCAAATTCTTTTGTCGTGGGTTATGGAATGGACTTCGCCGAACTCTACAGAAACTTGCCTTACATTGGTGTCTTGAAGGCGGAGCACTATCGCTGA 570 46.67 MAMVLDSHIEKVLWTKEQISDRVTDLAAEISLEFASVSTPPVLVGVATGAFLFFADLVRLIQLPIAVDFIRVDSYGSGTESSGTPFISSDLKLDVSGKHVILVEDIVDTGRTLSFLIEHFEAKGALSISICTFLDKPERREVHFQPFGEGKLYRGFKCPNSFVVGYGMDFAELYRNLPYIGVLKAEHYR 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24586395 24588490 - Bma030252 Bma01g01441 75958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01441 189 CDD PRTases_typeI 26 141 IPR000836 -
Bma01g01441 189 Gene3D - 2 189 IPR029057 -
Bma01g01441 189 TIGRFAM HGPRTase: hypoxanthine phosphoribosyltransferase 12 184 IPR005904 GO:0004422|GO:0006166
Bma01g01441 189 SUPERFAMILY PRTase-like 3 188 IPR029057 -
Bma01g01441 189 Pfam Phosphoribosyl transferase domain 18 170 IPR000836 -
Bma01g01441 189 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 6 188 - -
Bma01g01441 189 PANTHER HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE 6 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01441 K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] - rcu:8281394 294.664
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma05g00406 . 89 575 PRT Gene Family AT2G16570 84.9 4.7e-244 840.5
Bma05g00409 . 1 306 PRT Gene Family AT2G16570 83.5 5.6e-144 508.1
Bma05g00406 . 91 575 PRT Gene Family AT4G34740 85.6 1.0e-243 839.3
Bma05g00409 . 1 302 PRT Gene Family AT4G34740 82.0 5.0e-145 511.5
Bma05g00406 . 86 548 PRT Gene Family AT4G38880 74.2 1.7e-195 679.1
Bma05g00409 . 1 289 PRT Gene Family AT4G38880 75.9 1.5e-122 436.8
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 5 97 PRT Gene Family AT4G22570 84.9 1.8e-43 171.8
Bma05g00772 . 5 97 PRT Gene Family AT4G22570 82.8 7.4e-42 166.4
Bma12g00164 . 1 96 PRT Gene Family AT4G12440 83.3 9.8e-41 162.5
Bma05g00772 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma01g01441 . 3 188 PRT Gene Family AT1G71750 61.4 2.9e-63 238.4
Bma14g00666 . 16 470 PRT Gene Family AT1G55810 83.3 1.3e-220 762.3
Bma07g01237 . 16 459 PRT Gene Family AT1G55810 82.0 5.9e-213 736.9
Bma14g00666 . 67 475 PRT Gene Family AT3G27440 75.3 4.2e-181 630.9
Bma07g01237 . 67 459 PRT Gene Family AT3G27440 74.6 1.5e-173 605.9
Bma14g00666 . 3 469 PRT Gene Family AT3G27190 73.9 1.8e-204 708.8
Bma07g01237 . 3 459 PRT Gene Family AT3G27190 73.8 4.2e-201 697.6
Bma14g00666 . 1 470 PRT Gene Family AT4G26510 83.3 3.2e-230 794.3
Bma07g01237 . 1 459 PRT Gene Family AT4G26510 82.8 2.9e-223 771.2
Bma14g00666 . 3 472 PRT Gene Family AT5G40870 73.7 8.3e-205 709.9
Bma07g01237 . 3 459 PRT Gene Family AT5G40870 73.1 3.1e-199 691.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011220 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01441 Bma_Chr01 FPKM 5.248227 5.938941 12.053082 11.076348 10.793335 8.242418 10.685052 10.071409 9.478781 10.173644