Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01447 ATGGATGAGGACGGAACCAGTCAAGATCATAAGCAAGGAATTAAGCTCTTTGGAAAGAGAATTACGTTTGATGATAAGCATGTAAAGGATGAAGACAAAGCTGAAGATGAACAGAGAGTTGAAAAGAGGCCAGAAAAGATCATCCCTTGCCCTAGATGCAAGAGCATGGAGACCAAGTTCTGTTACTTCAACAACTACAATGTAAACCAGCCTAGACATTTCTGCAAGGGTTGCGAGAGGTACTGGACAGCAGGAGGAGCCCTCCGCAACGTTCCCGTCGGAGCTGGGCGCCGGAAAACCAAGCCTTTCTGTCGAAATAGCATTATTGGGTTGCCAGAAAGTTGCGTTTATGACCCATCTCCGGCGGCACTACACCAGTTTCAGTTAGATGGGATAATGGAGGACTGGAAAGTTATGGGTGGCCATGGTAGTTTCCAGCAAGCTTTTCCGGTGAAGAGGCGGAGGGACGGCCATGGAGGTAAAACATGTTGA 492 47.76 MDEDGTSQDHKQGIKLFGKRITFDDKHVKDEDKAEDEQRVEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCERYWTAGGALRNVPVGAGRRKTKPFCRNSIIGLPESCVYDPSPAALHQFQLDGIMEDWKVMGGHGSFQQAFPVKRRRDGHGGKTC 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25011422 25011913 - Bma001822.1 Bma01g01447 75964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01447 163 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Bma01g01447 163 PANTHER CYCLIC DOF FACTOR 2 9 155 IPR045174 GO:0003700|GO:0006355
Bma01g01447 163 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Bma01g01447 163 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Bma01g01447 163 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01447 Bma11g00999 CCT
Bma01g01447 Bma07g00840 CCT
Bma01g01447 Bma14g01000 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01447 Bma-Chr1:25011422 Bma07g00840 Bma-Chr7:28305636 4.26E-50 dispersed
Bma01g01447 Bma-Chr1:25011422 Bma11g00999 Bma-Chr11:45383043 3.15E-47 wgd
Bma01g01447 Bma-Chr1:25011422 Bma14g01000 Bma-Chr14:11645662 5.52E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56727 PF02701 zf-Dof 1.30E-31 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01447 - - zju:107410557 231.106