Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01458 ATGGCGACCAAAGAGAAGATCTACTTCGTAATGGAGTATGTTCGAGGTGGCGAGCTTTTCAACAAAGTGGCAAAAGGACGACTAAGAGAAGAACAAGCTCGCAAGTACTTCCAACAGCTAATCTCCGCCGTCGGATTCTGTCATTCGCGAGGAGTCTACCATCGGGATCTTAAACCTGAGAATCTCCTTCTAGACGAAAACGGCGACCTAAAAGTCTCCGATTTCGGTCTTAGTGCCGTCTCCGATCAGATTCGGCAGGACGGTCTCTTCCACACATTTTGCGGTACACCGTCGTACGTTGCACCAGAAGTTTTGGCCAGAAAGGGTTATGAAGCTTCAAAATTCGACATATGGTCTTGTGGAATTATTCTCTTCGTTTTAATGGCCGGATATTTGCCATTTAACGATCCAAATATCATGCAACTGTATACAAAAATTTATCGGGGAGAATTCCGATCACCTAAATGGTTCTCGCCGGAGCTAACCCGGCTACTGAAACGTCTCCTCGATGTAAATCCAGGAACCCGGATTACAATACCTGAGATTATGGAAAACAAATGGTTTAAAAAAGGGTTCAAGCAGGTAAAATTTTACATAGAAGACGACAAGCTCTGCAATATCAGAGATACCGACGAACATTTTGATTCTTTACCGGAAAGACAACCGGAGACAATGGAAGAGCACAGGAAACGTTCGCCGTTAACTCGTCCGGCGAGCTTGAACGCGTTTGATATAATTTCATTCTCGCGAGGTTTCGATCTTTCTTCGCTCTTTGAGGATAACGGGGAGGAAGCGAGGGTGATAACCGGAACTCCGGTGAAGAAGATTATAGCAAAGTTGGAGGAGATAGCGAAGGTGGTGAGTTTTACAGTGAGGAAGAAGGATTGCAGAGTCAGAATGGAGGGGACGAGGGAAGGAGAGAGAGGTCCGTTGAGTGTAGAGGCGGAGATATTTGAGTTGACGCCGTCGTTGATGGTTGTGGAGGTGAAGAAGAAAGGAGGAGATGAAGTAGAGTATGAACAGTTTTGTAAAAGAGAATTGACGCCATTGTTGCGCAGCTTGGAGCTCCATGAATCTCCATCTTCCTCCCATTTACCCTCTGATTCTGAATAA 1113 45.55 MATKEKIYFVMEYVRGGELFNKVAKGRLREEQARKYFQQLISAVGFCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPSYVAPEVLARKGYEASKFDIWSCGIILFVLMAGYLPFNDPNIMQLYTKIYRGEFRSPKWFSPELTRLLKRLLDVNPGTRITIPEIMENKWFKKGFKQVKFYIEDDKLCNIRDTDEHFDSLPERQPETMEEHRKRSPLTRPASLNAFDIISFSRGFDLSSLFEDNGEEARVITGTPVKKIIAKLEEIAKVVSFTVRKKDCRVRMEGTREGERGPLSVEAEIFELTPSLMVVEVKKKGGDEVEYEQFCKRELTPLLRSLELHESPSSSHLPSDSE 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26284329 26285441 - Bma001842.1 Bma01g01458 75975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01458 370 Pfam NAF domain 237 293 IPR004041 GO:0007165
Bma01g01458 370 SMART serkin_6 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01458 370 Pfam Protein kinase domain 2 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01458 370 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 363 - -
Bma01g01458 370 Gene3D Kinase associated domain 1, KA1 240 354 - -
Bma01g01458 370 ProSiteProfiles NAF domain profile. 235 259 IPR018451 GO:0007165
Bma01g01458 370 CDD CIPK_C 241 352 - -
Bma01g01458 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Bma01g01458 370 SUPERFAMILY Protein kinase-like (PK-like) 3 189 IPR011009 -
Bma01g01458 370 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01458 370 PANTHER - 1 363 - -
Bma01g01458 370 Gene3D Transferase(Phosphotransferase) domain 1 1 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01458 Bma-Chr1:26284329 Bma07g00811 Bma-Chr7:25338716 0 dispersed
Bma01g01458 Bma-Chr1:26284329 Bma11g00993 Bma-Chr11:45126478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66284 PF00069 Pkinase 4.70E-53 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01458 - - jre:109011279 552.362