Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01469 ATGGATGAAGCTCCGGAAAGCTCGAGTTCGTTGGCTCCTTTTCTGTCGAAGACATATGAAATGGTGGATGATTCTTCCTCTGATTCGATTGTCACTTGGAGTTCGAGTAATAAAAGCTTCGTTGTATTGAATCCGCCAGAGTTCTCGAGAGTTTTGCTTCCGAGATTCTTCAAGCACAACAACTTCTCCAGCTTCATTCGGCAGCTCAATACATACGGTTTTAGGAAAATGGATCCTGAACAGTGGGAGTTTGCTAATGAGGATTTCATAAGAGGTCAGCCACACCTGTTAAAGAACATTCATCGGAGAAAACCTGTTCACAGCCATTCTTTACCATCTGCACGAGGCAGTTCTCCGTTAGCTGAATCTGAAAGACAGAGTTATAAGAATGAAATCGAGATGCTAAAACGGCAAAAAGAACGGATTCATCTGGAGCTTCAGAGGCATGAACAAGACAGAGAGGGAATTGAATTGGAAATGCAGCTTTTGAACGACAAGTTCGTACAGATGCAAGAACGTCAGAAGAAATTGGTTGCATTTTTGGCCCGAGTACTGCAAAAACCAGGATTGGATTGGAATCTTGAGCCACAATCAGAACCCCATGAAAGAAAGAGAAGGCTATGCAGAACTAATTTCTATCACGATGAAATTAGCCTCGAAGATAATCAAATGGGGACAGCCCAATCTGGATCCATAAACTTGGAGAGATTTGATCTTCCTGAGGCATCTCTAGCGTATTTGGAAAATATTGTTCGTGATGTTTGCCAGAATTTAACATCGCCTAATTTGTCAGCCAACATTGAGTTAGACGAATCCATAAATTGTTCTGAAAGCCCTTCAATATCCGCCGTTCCACTTGATGCGAATGGTGGATCAAAATCTCCTAGAATTGACATGAATTCAGAGCCCACTGCAGTGATTTCTTCTGATACTGATGCCTTGAAAAAACACCCTCCCCTCACCAATGCCACTGTTTCAGCTGGTGTTAATGATGTTTTCTGGGAGCAGTTTTTGACTGAAAATCCTGGTTCTTCTGCCTCACAGGAACTTCAATCAGAAAGAAAGGATTCTGATCTCAGAAAGGGTGAAACCAGGCCAAATGAACATGGGAAATTCTGGTGGAATGTAAATAACCTTACTGAACGAATGGGCCATCTTACTCCAGTGGAAAAAACTTAG 1179 42.15 MDEAPESSSSLAPFLSKTYEMVDDSSSDSIVTWSSSNKSFVVLNPPEFSRVLLPRFFKHNNFSSFIRQLNTYGFRKMDPEQWEFANEDFIRGQPHLLKNIHRRKPVHSHSLPSARGSSPLAESERQSYKNEIEMLKRQKERIHLELQRHEQDREGIELEMQLLNDKFVQMQERQKKLVAFLARVLQKPGLDWNLEPQSEPHERKRRLCRTNFYHDEISLEDNQMGTAQSGSINLERFDLPEASLAYLENIVRDVCQNLTSPNLSANIELDESINCSESPSISAVPLDANGGSKSPRIDMNSEPTAVISSDTDALKKHPPLTNATVSAGVNDVFWEQFLTENPGSSASQELQSERKDSDLRKGETRPNEHGKFWWNVNNLTERMGHLTPVEKT 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27538842 27540462 - Bma001861.1 Bma01g01469 75986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01469 392 MobiDBLite consensus disorder prediction 351 368 - -
Bma01g01469 392 MobiDBLite consensus disorder prediction 340 370 - -
Bma01g01469 392 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma01g01469 392 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma01g01469 392 MobiDBLite consensus disorder prediction 111 125 - -
Bma01g01469 392 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma01g01469 392 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma01g01469 392 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma01g01469 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 376 IPR027725 -
Bma01g01469 392 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma01g01469 392 MobiDBLite consensus disorder prediction 104 127 - -
Bma01g01469 392 SUPERFAMILY Winged helix DNA-binding domain 9 103 IPR036390 -
Bma01g01469 392 Coils Coil 118 173 - -
Bma01g01469 392 Gene3D - 6 104 IPR036388 -
Bma01g01469 392 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01469 K09419 HSFF; heat shock transcription factor, other eukaryote - cit:102622798 470.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01469 Bma14g00978 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01469 Bma-Chr1:27538842 Bma02g01198 Bma-Chr2:54072709 1.13E-64 dispersed
Bma12g00697 Bma-Chr12:29795271 Bma01g01469 Bma-Chr1:27538842 1.22E-77 transposed
Bma01g01469 Bma-Chr1:27538842 Bma14g00978 Bma-Chr14:11396471 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56728 PF00447 HSF_DNA-bind 1.20E-30 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01469 Bma_Chr01 FPKM 5.164247 5.154928 3.692092 4.348388 8.823456 9.527904 8.757822 5.892768 5.89533 6.018121