Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01472 ATGGAGTCGAAGATTCCGGTTAGGTTTCCGCTTGGGCGGCAGTCATCTTTAGCGCCGGACAGGCACTTAGGAGAATTGGATGATCTGGAAGATGCGGAAAAGATCGATCCTGGCGTAAAACTGATGTATTTGGCTAATGAAGGTGATTTGGAAGGAATCGCGGAGCTTTTGGATTCAGGAATCGACGTCAATTTCCGTGATATTGATGGCCGCACGGCTCTCCATATTTCTGCATGCCAGGGGTATTCTGACGTTGTTGATTTGTTGCTTCAAAGAGGAGCTGAGGTTGACCCTAAAGATCGCTGGGGAAGCACGCCTCTTGCGGATGCTATTCACTACAAAAACCATAATGTGATTAAGTTGTTGGAGAAACATGGTGCAAAACCCCTGATGGCCCCAATGCATGTAAAGCATGCTCGCGAAGTACCAGAATATGAAATTGATCCAAAAGAGCTTGATTTTACAAACAGTGTCGACATAACGAAGGGAACTTTCCGTATGGCATCATGGCGTGGGATAGATGTTGCAGTAAAAAAGTTTGCGGAGGATGTGATTGCTGAGGAGGATGAAGTGAGGGCATTTCGTGATGAGCTTGCACTTCTTCAGAAGTTAAGACATCCAAATGTTGTGCAATTTCTAGGTGCAGTGACTCAGAATAGTCCAATGATGATTGTTACAGAATATTTACCAAAGGGAGATCTTTTTGAATTCTTGAAAAAGAAAGGAGCATTAAAACCAATAGTTGCTGTTAGATTTGCCCTTGATATTGCAAGGGGTATGAGTTATTTGCATGAGAATAAGCCTACACCAATAATTCACTGTGATCTTGAGCCTTCAAATATATTACGGGATGACTCTGGGCAGTTGAAAGTTGCAGATTTTGGGGTTAGCAAGTTGTTGACAGTTAAAGAAAATAAGCCTCTATCATGCCAAGTCACTTCCTGCCGATATGTGGCTCCTGAGGTTTTCAAAACTGAAGGCTATGATACAAAGGTGGATGTATTCTCATTTGCTTTAATTCTACAGGAGCCTTACCGTTTGGATCTTTTTAATTTATTTCAACAGATGATTGAAGGCTGCCCTCCGTTTTCTGCAAAGAAAGAACATGAAGTTTCTAAATCATATGCTGCAAGAGAACGTCCACCTTTTAAAGCCCCATCTAAACATTACGCTCATGGACTTAGAGAGTTAATTGAAGAGTGCTGGCACGAGAAGCCAGCCAAAAGACCAACTTTTAGGCAGATTATAAGAAGGCTGGAATCCATCTCTAACAATCTTGGTCACAAAAGGCGTTGGAAGGTTCCTCTCTCTCTTACATACTCTATTTGTGCATGTGCTCAGGCACCTATAACCATGTTTTGCATTGTTTATTTATTTAATATCACTCACTCTATTGGATCTACTTTCAAATATGCAATATAA 1422 41.49 MESKIPVRFPLGRQSSLAPDRHLGELDDLEDAEKIDPGVKLMYLANEGDLEGIAELLDSGIDVNFRDIDGRTALHISACQGYSDVVDLLLQRGAEVDPKDRWGSTPLADAIHYKNHNVIKLLEKHGAKPLMAPMHVKHAREVPEYEIDPKELDFTNSVDITKGTFRMASWRGIDVAVKKFAEDVIAEEDEVRAFRDELALLQKLRHPNVVQFLGAVTQNSPMMIVTEYLPKGDLFEFLKKKGALKPIVAVRFALDIARGMSYLHENKPTPIIHCDLEPSNILRDDSGQLKVADFGVSKLLTVKENKPLSCQVTSCRYVAPEVFKTEGYDTKVDVFSFALILQEPYRLDLFNLFQQMIEGCPPFSAKKEHEVSKSYAARERPPFKAPSKHYAHGLRELIEECWHEKPAKRPTFRQIIRRLESISNNLGHKRRWKVPLSLTYSICACAQAPITMFCIVYLFNITHSIGSTFKYAI 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27897242 27900900 + Bma001868.1 Bma01g01472 75989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01472 473 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 443 - -
Bma01g01472 473 CDD STKc_MAP3K-like 168 419 - -
Bma01g01472 473 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Bma01g01472 473 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Bma01g01472 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 443 - -
Bma01g01472 473 SMART ANK_2a 69 98 IPR002110 GO:0005515
Bma01g01472 473 SMART ANK_2a 102 131 IPR002110 GO:0005515
Bma01g01472 473 SMART ANK_2a 37 65 IPR002110 GO:0005515
Bma01g01472 473 Gene3D - 18 144 IPR036770 -
Bma01g01472 473 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Bma01g01472 473 SUPERFAMILY Protein kinase-like (PK-like) 164 421 IPR011009 -
Bma01g01472 473 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Bma01g01472 473 SUPERFAMILY Ankyrin repeat 40 130 IPR036770 -
Bma01g01472 473 PIRSF ILK 2 440 - -
Bma01g01472 473 Gene3D Transferase(Phosphotransferase) domain 1 230 437 - -
Bma01g01472 473 Pfam Protein tyrosine and serine/threonine kinase 160 419 IPR001245 GO:0004672|GO:0006468
Bma01g01472 473 ProSiteProfiles Protein kinase domain profile. 119 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01472 Bma-Chr1:27897242 Bma14g01847 Bma-Chr14:39510068 0 dispersed
Bma01g01472 Bma-Chr1:27897242 Bma03g00620 Bma-Chr3:5114687 1.45E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66285 PF07714 PK_Tyr_Ser-Thr 2.40E-49 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01472 - - cit:102618860 677.937