Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01473 ATGGATCTATTCTTCTTTGCTTTTCAGCTTGCTACAATGGCGCATTTAGATCAAAATCAGTCGAATATGGTGGAATCGCTGCAGAGAAAATTGCGTAGAGGAAAGATCGAGATTAAGCGAATTGAAAATACTACAAATCGTCAAGTAACTTTCTGCAAGCGTCGAAATGGGTTGCTGAAGAAAGCGTACGAGCTTTCTGTTCTTTGTGATGCGGAGGTTGCTCTAATCGTCTTCTCTAGCAGAGGCAAACTCTATGAATATGCTAATAACAGTGTCCAAGGAACAGTCGAGAAGTATAAAAAGACTTGCATGGATTCCTCAAGTAACAGAACGACGACAGAAGCCAATATCCAGTCTTACCAACAAGAGTCGGCGAAACTTCGTGTGCAGATCGGAAATTTGCTGAATTCAAACAGGCAAATGCTGGGTGGTCAGTCTGTGAGTGGTTTGAAAGATAAGGATTTGAAAAACATGGAAAAAGACTTGGAGAAAGGAATAAGCAAAATCAGATCGAGAAAGAATGAGCTTTTATTTGCAGAAATTGAGTACATGAGGAAAAAGGAAATCGAACTTCACAACAATAACCAGCTCCTCCGAGCCAAGGTCTATAATTTAATTTATATTCTAATTTTCGCGTAA 639 39.44 MDLFFFAFQLATMAHLDQNQSNMVESLQRKLRRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEYANNSVQGTVEKYKKTCMDSSSNRTTTEANIQSYQQESAKLRVQIGNLLNSNRQMLGGQSVSGLKDKDLKNMEKDLEKGISKIRSRKNELLFAEIEYMRKKEIELHNNNQLLRAKVYNLIYILIFA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27996969 28000280 + Bma001870.1 Bma01g01473 75990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01473 212 ProSiteProfiles K-box domain profile. 117 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g01473 212 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Bma01g01473 212 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Bma01g01473 212 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Bma01g01473 212 Coils Coil 24 44 - -
Bma01g01473 212 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Bma01g01473 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 202 - -
Bma01g01473 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Bma01g01473 212 Pfam K-box region 114 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g01473 212 Gene3D - 43 126 IPR036879 GO:0003677|GO:0046983
Bma01g01473 212 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 32 202 - -
Bma01g01473 212 SUPERFAMILY SRF-like 33 105 IPR036879 GO:0003677|GO:0046983
Bma01g01473 212 CDD MADS_MEF2_like 32 108 IPR033896 GO:0000977|GO:0045944
Bma01g01473 212 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Bma01g01473 212 Coils Coil 212 212 - -
Bma01g01473 212 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01473 Bma-Chr1:27996969 Bma11g00967 Bma-Chr11:43266137 1.39E-85 dispersed
Bma01g01473 Bma-Chr1:27996969 Bma02g01245 Bma-Chr2:54543470 2.55E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56729 PF01486 K-box 2.00E-21 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01473 K09264 - qsu:112006550 276.174