Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01475 ATGTTGGGAGTTGATCGTCTCGATATGATAAAGGGAATTCCTCAAAAAATTCTTGCATTTGAAAAATTCCTCGAAGAAAATCCAAGTTGGCGTGACAAAGTAGTTTTATTACAAATAGCAGTTCCAACAAGAACAGATGTTCCTGAATATCAAAAGCTTACAAGCCAGGTTCACGAGATTGTTGGACGAATAAATGGAAGATTCGGAACACTGACTGCTGTCCCAATACATCATCTGGATCGATCTCTTGATTTTCATGCATTATGTGCACTCTATGCTGTTACAGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTGGTGAGCTACGAATTTGTTGCTTGTCAAGCTTCTAAGAAAGGGGTTCTCATTCTAAGTGAGTTTGCAGGGGCAGCACAGTCTCTTGGTGCAGGTGCTCTTTTGGTGAATCCATGGAATATCTCAGAAGTCGCAGCCTCCATTGGCTATGCTTTAAATATGCGGGCGAATGAAAGAGAAAAGCGTCATCATCATAATTTTATGCATGTCACAACTCACACATCGCAGGAATGGGCTGCAACATTTGTTAGTGAACTCAATGATACCATAGTAGAAGCACAAATAAGGACAAGACAAGTTCCACCTTTACTCCCAACCAGACTTGCGGTAGATCGGTATTCACAATCTCATAATCGACTGCTTATACTGGGATTCAATGCAACCTTAACTGAACCAGTTGATGCTCTAGGAAGAAGGGGTGGACAGATTAGAGAAATGGACCTTAAATTGCATGCAGAAGTGAAAGAACCCTTGAAGAAACTTTGTGATGACCCAAGGACAACCGTTGTTGTGCTTAGTGGAAGTGATAGAAGCATCCTTGATGACAATTTTGGGGACTTCAATATGTGGTTGGCAGCAGAAAATGGGATGTTTTTGCGGACGACGAAAGGTGAATGGATGACTACAATGCCAGAAAATTTGAATATGGATTGGGTTGACAGTGTGAAGCATGTTTTTGAATATTTTACTGAAAGAACGCCTCGATCGCATTTTGAAGTTCGTGAAACTTCACTTTTGTGGAACTACAAGTATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGAGATATGTTGCAACATTTGTGGACTGGTCCAATCTCAAATGCATCTGTTGATGTCGTCCAAGGTGGCCGGTCAGTGGAGGTCCGAGCAGTCGGAGTTACAAAGGGTGCTGCTATCGATCGTATCTTGGGAGAAATTGTTCATGACAAAGGCATGAAGATTCCCATTGACTATGTCTTGTGTATTGGACATTTTTTAGCAAAGGATGAAGATATCTATGCATTTTTTGAACCAGAGCTCCCTTCCGAAGCGCCGTGCATGACAAGAACGGCTGTGACAAGTCCAATCAACTCAGTGCCGAAGTTCTCAATCTCTAAATCTTCGTCCAAAGCGATTCGGCTCAAGAAACAAAAATCACTGTCAATACACGACAGGAAAAGTAATAACCTTGGGACGAGTATTTCTTGGAGGCCAATATTGCGAGATCGAATATCTCTTCAAGAGGGTTCATCTGTGCTCGATCTGAGAGGCGATAATTATTTCTCATGCGCCGTCAGACGAAAAAGGTCGAATGCAAGGTACCTTCTGGGAACGTCAAATGATGTCGTCACGCTGTTAAAAGAATTGTCAGAAAGTTCAATTCCAAACTAG 1698 41.87 MLGVDRLDMIKGIPQKILAFEKFLEENPSWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGALLVNPWNISEVAASIGYALNMRANEREKRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQVPPLLPTRLAVDRYSQSHNRLLILGFNATLTEPVDALGRRGGQIREMDLKLHAEVKEPLKKLCDDPRTTVVVLSGSDRSILDDNFGDFNMWLAAENGMFLRTTKGEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFEVRETSLLWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGGRSVEVRAVGVTKGAAIDRILGEIVHDKGMKIPIDYVLCIGHFLAKDEDIYAFFEPELPSEAPCMTRTAVTSPINSVPKFSISKSSSKAIRLKKQKSLSIHDRKSNNLGTSISWRPILRDRISLQEGSSVLDLRGDNYFSCAVRRKRSNARYLLGTSNDVVTLLKELSESSIPN 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28170803 28186694 + Bma001874.1 Bma01g01475 75992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01475 565 PANTHER BNAA02G18920D PROTEIN 1 559 - -
Bma01g01475 565 Gene3D Glycogen Phosphorylase B; 181 192 - -
Bma01g01475 565 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 198 - -
Bma01g01475 565 Pfam Glycosyltransferase family 20 1 195 IPR001830 GO:0003824|GO:0005992
Bma01g01475 565 Gene3D - 320 400 - -
Bma01g01475 565 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 559 IPR001830 GO:0003824|GO:0005992
Bma01g01475 565 Gene3D Glycogen Phosphorylase B; 1 180 - -
Bma01g01475 565 CDD HAD_TPP 228 448 - -
Bma01g01475 565 Pfam Trehalose-phosphatase 253 458 IPR003337 GO:0003824|GO:0005992
Bma01g01475 565 SUPERFAMILY HAD-like 228 416 IPR036412 -
Bma01g01475 565 Gene3D - 254 414 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01475 Bma-Chr1:28170803 Bma14g00269 Bma-Chr14:3159374 0 dispersed
Bma01g01475 Bma-Chr1:28170803 Bma07g01154 Bma-Chr7:45762061 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01475 K16055 - fve:101298299 954.125