Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01487 ATGCGTTCGCCAGCTGGTTCTTCTTCAGGTGCTAGTAACATGAGGCCTTACAACACCAACGCGACTCCTATTACCGACAAACACAAAGCGATTGCACAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTACTGAATCTGGCAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCTGTGCCTGAAGAACAAATTACTGTTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAATCAGTTTTAAAATCATCAGCTACAGTGAGAACTGCTCTGGCCTATTGGGTCTAAAGTATCAATCAGAGTTAACACAGACAAAAAGTCTGATTGGAATTGATTTTAGAACATTTTTTACCTCTTCTTCGGCTACGTCTTTAGCAAAAGCTGCTGCATTCAGGGACATTGCACTCTTGAACCCTGTATGGGTTTACTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATCGTGATCGATTTGGAGCCTGCAAAGTCGGGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCTGGAGGTGATATAGGTGCTTTGTGCGACACGGTTGTGGAAGACGTTCAGAAGCTTACTGGGTATGATAGGGTCATGGTTTACAAATTCCATGACGATGACCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCACAGATATCCCCCAAGCTGCCCGTTTTCTGTTCAAGCAAAATCGAATTCGGATGATCTGCGATTGCCAAGCAAAGCCGGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCCACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCATCACTAGTAATGGCAGTCATCATAAATAGTAACAAGGGAACGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACATCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGTGATATGCTCCTTCGAGATGCTCCTTATAGTCTAATGACTCAATCTCCGAGCATTATGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACGGCGGGACTTGTTGGCTTCTGGGTGTCACACCATCTGAATCACAAGTTGTAGATATTGCAGAGTGGCTTCTTAGTAATCATGAGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAAGTGCAGCTTCGCTGGGCGATGCAGTGTGTGGCATGGCAGCAGCAAGAATCTCGTTGAAGGATTTCTTATTCTGGTTCAGATCTCATATGGCTAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGAAGATAAGGATGATGGTGGAAAAATGCACCCAAGGTCGTCTTTCAATGCCTTTCTTGAAGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATTCATTCTCTGCAACTTATAATGAGAGACTCGTTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGGGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCCATGGTTCCAATTTTTGGGGTTGATACGGCTGGGCTAATTAATGGATGGAATGCTAAAATTTCTGAACTGACAGGACTAGAATCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGAAATTGCTCATGAGGATTCACGGCATATGGTTGGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAAATTTTGTGGATAATAAAAGAAACTCCGCCTTGTACATGATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAAAGTGATTGGTGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCGTTATGGATAAATTTATTCGACTCGAAGGAGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCCTCTGATGAGAATGCTTGCTGCACAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTAATAGGAAAAATGCTTCCCGGGGAAATTTTTGGAACTTTCTGTCAATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTATAAAACCATTGGTGGTCAAGAAACCGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAATATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGATCATTGGCTGTTTCTGCTTCTTAAAGATTGTTGTGCCGGAAGTGTATCAGGCTGCAGAAGAACATATGGAGTATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGATAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTCGAGAGTAGTTGCCTTACAGAAAATCAGAAACTCTTTCTTAATACTAGTGATGCATGTGAGAGACAGATCATGATGGTCATTGAGGATATGAACTTGAGAAGATTAGAAGGAGGAAGTATAGAGCTGAAAATTGAAGAATTTGGGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGGTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTCCACGGCGATCAAATTAAGCTACAGATAGTCTTGTCAAACTTTTTGCTCAATGTAGTGAATCACGCACCTTCTCCGGGTGGTTGGGTGGAAATCAACATCTCGACTGGTTTAATATCAATGGAGGATGACGCAGACATTATCCACTTGCAGTTCAGAATGACGCACCCTGGTGAAGGGCTGCCTTCAACTTTGGTCCAAGACATGTTTGAAGGAGGAAATGAGTTTAATTCACATGAAGGTCTTGGACTAAACCTCTCAAGAAAACTTCTGAAGAAGATGAATGGTAATGTTCATTATGTCAGAGAACATAGTAAATGCTATTTCCTCATTGATCTTGAGCTTAAAATGAAGAAAGTTAACCCCGAATTTCCTAAATCTCGAACCAGCGATTGA 3366 42.51 MRSPAGSSSGASNMRPYNTNATPITDKHKAIAQYNADAGLLAEFEQSTESGKSFNYSRSVLHCLESVPEEQITVYLSRIQRGGLIQPFGCMIAVEEISFKIISYSENCSGLLGLKYQSELTQTKSLIGIDFRTFFTSSSATSLAKAAAFRDIALLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPAKSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRIRMICDCQAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGTTKLWGLVVCHHTSPRYIPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIMDLVKCDGAALYYGGTCWLLGVTPSESQVVDIAEWLLSNHEDSSGLSTDSLADAGYPSAASLGDAVCGMAAARISLKDFLFWFRSHMAKEVKWGGAKHHPEDKDDGGKMHPRSSFNAFLEVVKSRSLPWEVSEINAIHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQGVDELSSAAWEIVRLIETAMVPIFGVDTAGLINGWNAKISELTGLESSKAMGKSLVDEIAHEDSRHMVGSLISRALQGEEERDVELKLRNFVDNKRNSALYMMVNSCTSRDSKNKVIGVCFVGQDITSEKVVMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCTEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKTIGGQETEDLPFGFFDRKGIFVKVFLTANKRTDGDGEIIGCFCFLKIVVPEVYQAAEEHMEYVGESFLQLTELAYIQQEIKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVIEDMNLRRLEGGSIELKIEEFGLGNVLDAIVSQIMILMREKKVQLLHEIPGEIKSLTLHGDQIKLQIVLSNFLLNVVNHAPSPGGWVEINISTGLISMEDDADIIHLQFRMTHPGEGLPSTLVQDMFEGGNEFNSHEGLGLNLSRKLLKKMNGNVHYVREHSKCYFLIDLELKMKKVNPEFPKSRTSD 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28734629 28739071 - Bma001891.1 Bma01g01487 76004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01487 1121 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1112 - -
Bma01g01487 1121 SMART HisKA_10 881 945 IPR003661 GO:0000155|GO:0007165
Bma01g01487 1121 Gene3D - 396 569 IPR043150 -
Bma01g01487 1121 CDD HisKA 886 937 IPR003661 GO:0000155|GO:0007165
Bma01g01487 1121 Pfam Phytochrome region 404 577 IPR013515 GO:0006355|GO:0009584
Bma01g01487 1121 SUPERFAMILY GAF domain-like 200 387 - -
Bma01g01487 1121 Gene3D - 201 552 IPR029016 -
Bma01g01487 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 381 IPR016132 -
Bma01g01487 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 723 857 IPR035965 -
Bma01g01487 1121 TIGRFAM sensory_box: PAS domain S-box protein 613 728 IPR000014 -
Bma01g01487 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 938 1098 IPR036890 -
Bma01g01487 1121 SMART gaf_1 220 401 IPR003018 GO:0005515
Bma01g01487 1121 Gene3D PAS domain 753 862 - -
Bma01g01487 1121 ProSiteProfiles PAS repeat profile. 740 792 IPR000014 -
Bma01g01487 1121 ProSiteProfiles PAS repeat profile. 606 677 IPR000014 -
Bma01g01487 1121 Gene3D PAS domain 78 323 - -
Bma01g01487 1121 ProSiteProfiles Histidine kinase domain profile. 888 1107 IPR005467 -
Bma01g01487 1121 SUPERFAMILY GAF domain-like 399 578 - -
Bma01g01487 1121 PRINTS Phytochrome signature 702 719 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 539 557 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 421 441 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 506 525 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 722 742 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 609 625 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 628 643 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 ProSiteProfiles PAC domain profile. 680 736 IPR000700 -
Bma01g01487 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 79 189 IPR035965 -
Bma01g01487 1121 Pfam His Kinase A (phospho-acceptor) domain 886 945 IPR003661 GO:0000155|GO:0007165
Bma01g01487 1121 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Bma01g01487 1121 Gene3D - 922 1098 IPR036890 -
Bma01g01487 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 612 720 IPR035965 -
Bma01g01487 1121 CDD PAS 619 724 IPR000014 -
Bma01g01487 1121 Gene3D PAS domain 609 728 - -
Bma01g01487 1121 SMART HKATPase_4 993 1105 IPR003594 -
Bma01g01487 1121 MobiDBLite consensus disorder prediction 1 20 - -
Bma01g01487 1121 PANTHER PHYTOCHROME E 27 1112 - -
Bma01g01487 1121 Pfam PAS fold 610 724 IPR013767 GO:0006355
Bma01g01487 1121 Pfam PAS fold 740 859 IPR013767 GO:0006355
Bma01g01487 1121 SMART pas_2 608 675 IPR000014 -
Bma01g01487 1121 SMART pas_2 739 808 IPR000014 -
Bma01g01487 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 993 1102 IPR003594 -
Bma01g01487 1121 PIRSF Phytochrome_conventional 7 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma01g01487 1121 Pfam GAF domain 220 391 IPR003018 GO:0005515
Bma01g01487 1121 CDD HATPase_Phy-like 993 1105 IPR044767 -
Bma01g01487 1121 Pfam PAS fold 75 187 IPR013654 GO:0006355
Bma01g01487 1121 CDD PAS 751 859 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01487 K12123 PHYE; phytochrome E - tcc:18596568 1685.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01487 Bma14g00963 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01487 Bma-Chr1:28734629 Bma05g00993 Bma-Chr5:48415383 0 dispersed
Bma01g01487 Bma-Chr1:28734629 Bma14g00963 Bma-Chr14:10979022 0 wgd
Bma01g01487 Bma-Chr1:28734629 Bma14g00963 Bma-Chr14:10979022 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00954 . 186 1234 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1264.2
Bma14g01923 . 17 996 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1345.9
Bma04g00854 . 73 1029 Histidine Kinase Gene Family AT2G01830 52.9 9.1e-273 936.8
Bma02g01307 . 303 1275 Histidine Kinase Gene Family AT2G01830 51.4 5.5e-270 927.5
Bma01g00611 . 1 1119 Histidine Kinase Gene Family AT1G09570 76.7 0.0e+00 1754.2
Bma12g00850 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1253.4
Bma05g00993 CCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Bma06g01466 CCT 29 1111 Histidine Kinase Gene Family AT1G09570 53.1 0.0e+00 1157.5
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT1G09570 51.1 4.8e-314 1073.9
Bma05g00993 CCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1629.4
Bma06g01466 CCT 30 1084 Histidine Kinase Gene Family AT2G18790 74.6 0.0e+00 1598.2
Bma01g01487 BCT 8 1043 Histidine Kinase Gene Family AT2G18790 62.5 0.0e+00 1290.4
Bma14g00963 BCT 1 1025 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1215.7
Bma12g00850 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1110.9
Bma01g00611 . 21 1055 Histidine Kinase Gene Family AT2G18790 51.2 8.4e-309 1056.6
Bma12g00850 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1401.0
Bma05g00993 CCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1116.7
Bma06g01466 CCT 21 1109 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1111.3
Bma01g00611 . 9 1114 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1097.8
Bma05g00993 CCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.4 0.0e+00 1654.8
Bma06g01466 CCT 30 1108 Histidine Kinase Gene Family AT4G16250 74.0 0.0e+00 1619.8
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT4G16250 60.8 0.0e+00 1318.5
Bma14g00963 BCT 15 1087 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1237.2
Bma12g00850 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1137.1
Bma01g01487 BCT 7 1106 Histidine Kinase Gene Family AT4G18130 64.5 0.0e+00 1409.8
Bma14g00963 BCT 19 1088 Histidine Kinase Gene Family AT4G18130 62.1 0.0e+00 1331.2
Bma05g00993 CCT 37 1119 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1250.3
Bma06g01466 CCT 38 1108 Histidine Kinase Gene Family AT4G18130 58.1 0.0e+00 1243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01487 Bma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.772079 0.684521 0.541454 2.141538 1.347997 1.849593