Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01487 ATGCGTTCGCCAGCTGGTTCTTCTTCAGGTGCTAGTAACATGAGGCCTTACAACACCAACGCGACTCCTATTACCGACAAACACAAAGCGATTGCACAGTATAATGCTGACGCTGGGCTTTTGGCTGAGTTTGAGCAGTCTACTGAATCTGGCAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCTGTGCCTGAAGAACAAATTACTGTTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAATCAGTTTTAAAATCATCAGCTACAGTGAGAACTGCTCTGGCCTATTGGGTCTAAAGTATCAATCAGAGTTAACACAGACAAAAAGTCTGATTGGAATTGATTTTAGAACATTTTTTACCTCTTCTTCGGCTACGTCTTTAGCAAAAGCTGCTGCATTCAGGGACATTGCACTCTTGAACCCTGTATGGGTTTACTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCATAGAATTGATGTGGGGATCGTGATCGATTTGGAGCCTGCAAAGTCGGGCGATCCTGCATTATCACTTGCGGGTGCAGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCTGGAGGTGATATAGGTGCTTTGTGCGACACGGTTGTGGAAGACGTTCAGAAGCTTACTGGGTATGATAGGGTCATGGTTTACAAATTCCATGACGATGACCATGGTGAGGTTGTTTCAGAGATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCACAGATATCCCCCAAGCTGCCCGTTTTCTGTTCAAGCAAAATCGAATTCGGATGATCTGCGATTGCCAAGCAAAGCCGGTAAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCCACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCATCACTAGTAATGGCAGTCATCATAAATAGTAACAAGGGAACGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACATCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGTGATATGCTCCTTCGAGATGCTCCTTATAGTCTAATGACTCAATCTCCGAGCATTATGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACGGCGGGACTTGTTGGCTTCTGGGTGTCACACCATCTGAATCACAAGTTGTAGATATTGCAGAGTGGCTTCTTAGTAATCATGAGGATTCTAGTGGGTTGAGCACGGATAGTTTAGCCGATGCTGGATATCCAAGTGCAGCTTCGCTGGGCGATGCAGTGTGTGGCATGGCAGCAGCAAGAATCTCGTTGAAGGATTTCTTATTCTGGTTCAGATCTCATATGGCTAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGAAGATAAGGATGATGGTGGAAAAATGCACCCAAGGTCGTCTTTCAATGCCTTTCTTGAAGTTGTCAAAAGTAGAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATTCATTCTCTGCAACTTATAATGAGAGACTCGTTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGTAGTGCCCAGCTGAGTGATTCTAAGATGCAGGGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAGATTGATTGAGACAGCCATGGTTCCAATTTTTGGGGTTGATACGGCTGGGCTAATTAATGGATGGAATGCTAAAATTTCTGAACTGACAGGACTAGAATCTAGTAAAGCCATGGGAAAATCTTTGGTGGATGAAATTGCTCATGAGGATTCACGGCATATGGTTGGAAGTCTCATCAGTCGTGCTTTGCAAGGTGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAAATTTTGTGGATAATAAAAGAAACTCCGCCTTGTACATGATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAAAGTGATTGGTGTTTGCTTCGTGGGTCAAGATATTACATCGGAGAAAGTCGTTATGGATAAATTTATTCGACTCGAAGGAGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCCTCTGATGAGAATGCTTGCTGCACAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGAGATGAAGTAATAGGAAAAATGCTTCCCGGGGAAATTTTTGGAACTTTCTGTCAATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTATAAAACCATTGGTGGTCAAGAAACCGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAATATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGAGAGATCATTGGCTGTTTCTGCTTCTTAAAGATTGTTGTGCCGGAAGTGTATCAGGCTGCAGAAGAACATATGGAGTATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGATAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTCGAGAGTAGTTGCCTTACAGAAAATCAGAAACTCTTTCTTAATACTAGTGATGCATGTGAGAGACAGATCATGATGGTCATTGAGGATATGAACTTGAGAAGATTAGAAGGAGGAAGTATAGAGCTGAAAATTGAAGAATTTGGGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGGTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTCCACGGCGATCAAATTAAGCTACAGATAGTCTTGTCAAACTTTTTGCTCAATGTAGTGAATCACGCACCTTCTCCGGGTGGTTGGGTGGAAATCAACATCTCGACTGGTTTAATATCAATGGAGGATGACGCAGACATTATCCACTTGCAGTTCAGAATGACGCACCCTGGTGAAGGGCTGCCTTCAACTTTGGTCCAAGACATGTTTGAAGGAGGAAATGAGTTTAATTCACATGAAGGTCTTGGACTAAACCTCTCAAGAAAACTTCTGAAGAAGATGAATGGTAATGTTCATTATGTCAGAGAACATAGTAAATGCTATTTCCTCATTGATCTTGAGCTTAAAATGAAGAAAGTTAACCCCGAATTTCCTAAATCTCGAACCAGCGATTGA 3366 42.51 MRSPAGSSSGASNMRPYNTNATPITDKHKAIAQYNADAGLLAEFEQSTESGKSFNYSRSVLHCLESVPEEQITVYLSRIQRGGLIQPFGCMIAVEEISFKIISYSENCSGLLGLKYQSELTQTKSLIGIDFRTFFTSSSATSLAKAAAFRDIALLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPAKSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRIRMICDCQAKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGTTKLWGLVVCHHTSPRYIPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIMDLVKCDGAALYYGGTCWLLGVTPSESQVVDIAEWLLSNHEDSSGLSTDSLADAGYPSAASLGDAVCGMAAARISLKDFLFWFRSHMAKEVKWGGAKHHPEDKDDGGKMHPRSSFNAFLEVVKSRSLPWEVSEINAIHSLQLIMRDSFQEIGNSSEKGFGSAQLSDSKMQGVDELSSAAWEIVRLIETAMVPIFGVDTAGLINGWNAKISELTGLESSKAMGKSLVDEIAHEDSRHMVGSLISRALQGEEERDVELKLRNFVDNKRNSALYMMVNSCTSRDSKNKVIGVCFVGQDITSEKVVMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCTEWNAAMEKLTGWKRDEVIGKMLPGEIFGTFCQLKGQDTLTKFMISLYKTIGGQETEDLPFGFFDRKGIFVKVFLTANKRTDGDGEIIGCFCFLKIVVPEVYQAAEEHMEYVGESFLQLTELAYIQQEIKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVIEDMNLRRLEGGSIELKIEEFGLGNVLDAIVSQIMILMREKKVQLLHEIPGEIKSLTLHGDQIKLQIVLSNFLLNVVNHAPSPGGWVEINISTGLISMEDDADIIHLQFRMTHPGEGLPSTLVQDMFEGGNEFNSHEGLGLNLSRKLLKKMNGNVHYVREHSKCYFLIDLELKMKKVNPEFPKSRTSD 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28734629 28739071 - Bma001891.1 Bma01g01487 76004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01487 1121 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1112 - -
Bma01g01487 1121 SMART HisKA_10 881 945 IPR003661 GO:0000155|GO:0007165
Bma01g01487 1121 Gene3D - 396 569 IPR043150 -
Bma01g01487 1121 CDD HisKA 886 937 IPR003661 GO:0000155|GO:0007165
Bma01g01487 1121 Pfam Phytochrome region 404 577 IPR013515 GO:0006355|GO:0009584
Bma01g01487 1121 SUPERFAMILY GAF domain-like 200 387 - -
Bma01g01487 1121 Gene3D - 201 552 IPR029016 -
Bma01g01487 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 381 IPR016132 -
Bma01g01487 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 723 857 IPR035965 -
Bma01g01487 1121 TIGRFAM sensory_box: PAS domain S-box protein 613 728 IPR000014 -
Bma01g01487 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 938 1098 IPR036890 -
Bma01g01487 1121 SMART gaf_1 220 401 IPR003018 GO:0005515
Bma01g01487 1121 Gene3D PAS domain 753 862 - -
Bma01g01487 1121 ProSiteProfiles PAS repeat profile. 740 792 IPR000014 -
Bma01g01487 1121 ProSiteProfiles PAS repeat profile. 606 677 IPR000014 -
Bma01g01487 1121 Gene3D PAS domain 78 323 - -
Bma01g01487 1121 ProSiteProfiles Histidine kinase domain profile. 888 1107 IPR005467 -
Bma01g01487 1121 SUPERFAMILY GAF domain-like 399 578 - -
Bma01g01487 1121 PRINTS Phytochrome signature 702 719 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 539 557 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 421 441 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 506 525 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 722 742 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 609 625 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 PRINTS Phytochrome signature 628 643 IPR001294 GO:0006355|GO:0009584
Bma01g01487 1121 ProSiteProfiles PAC domain profile. 680 736 IPR000700 -
Bma01g01487 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 79 189 IPR035965 -
Bma01g01487 1121 Pfam His Kinase A (phospho-acceptor) domain 886 945 IPR003661 GO:0000155|GO:0007165
Bma01g01487 1121 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Bma01g01487 1121 Gene3D - 922 1098 IPR036890 -
Bma01g01487 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 612 720 IPR035965 -
Bma01g01487 1121 CDD PAS 619 724 IPR000014 -
Bma01g01487 1121 Gene3D PAS domain 609 728 - -
Bma01g01487 1121 SMART HKATPase_4 993 1105 IPR003594 -
Bma01g01487 1121 MobiDBLite consensus disorder prediction 1 20 - -
Bma01g01487 1121 PANTHER PHYTOCHROME E 27 1112 - -
Bma01g01487 1121 Pfam PAS fold 610 724 IPR013767 GO:0006355
Bma01g01487 1121 Pfam PAS fold 740 859 IPR013767 GO:0006355
Bma01g01487 1121 SMART pas_2 608 675 IPR000014 -
Bma01g01487 1121 SMART pas_2 739 808 IPR000014 -
Bma01g01487 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 993 1102 IPR003594 -
Bma01g01487 1121 PIRSF Phytochrome_conventional 7 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma01g01487 1121 Pfam GAF domain 220 391 IPR003018 GO:0005515
Bma01g01487 1121 CDD HATPase_Phy-like 993 1105 IPR044767 -
Bma01g01487 1121 Pfam PAS fold 75 187 IPR013654 GO:0006355
Bma01g01487 1121 CDD PAS 751 859 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01487 Bma14g00963 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01487 Bma-Chr1:28734629 Bma05g00993 Bma-Chr5:48415383 0 dispersed
Bma01g01487 Bma-Chr1:28734629 Bma14g00963 Bma-Chr14:10979022 0 wgd
Bma01g01487 Bma-Chr1:28734629 Bma14g00963 Bma-Chr14:10979022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01487 K12123 - tcc:18596568 1685.62