Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma01g01496 | ATGAGGAAGACCGTCAGCAAACCCACTAGCAGCCCATGGTACGGCCCCGACCGTGTAAAGTACTTGGGCCCATTCTCCGGTGAGGCTCCCTCCTATCTGACCGGTGAATACCCTGGAGATTACGGATGGGACACCGCTGGACTCTCCGCTGACCCCGAAACCTTCTCAAAGAACCGAGAGCTAGAGGTCATCCACTCTCGATGGGCCATGCTCGGAGCCCTCGGCTGCGTCTTCCCGGAGCTGCTATCCAGAAACGGCGTGAAATTCGGAGAGGCCATATGGTTCAAGGCCGGATCTCAGATTTTCAGCGAGGGTGGACTAGACTATCTGGGCAACCCAAGCTTGGTCCACGCACAGAGCATCTTAGCCATCTGGGCTTCTCAGGTCATCTTAATGGGGGCAGTCGAAGGCTACCGTGTAGCCGGAGGGCCGCTTGGAGAAGTCACCGACCCAATCTACCCAGGTGGGTCTTTTGACCCGTTGGGTCTGGCCGACGACCCAGAAGCATTTGCAGAGCTGAAGGTGAAAGAGTTAAAGAACGGAAGGCTAGCCATGTTTTCAATGTTCGGATTCTTCGTTCAGGCCATCGTCACCGGAAAGGGACCTTTGGAGAATTTGGCCGACCACCTCGCAGACCCAGTCAACAATAACGCCTGGGCTTATGCAACCAACTTTGTTCCCGGAAAGTGA | 690 | 55.65 | MRKTVSKPTSSPWYGPDRVKYLGPFSGEAPSYLTGEYPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAIWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 29519144 | 29519833 | + | Bma001904.1 | Bma01g01496 | 76013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma01g01496 | 229 | SUPERFAMILY | Chlorophyll a-b binding protein | 12 | 226 | - | - | |
| Bma01g01496 | 229 | Pfam | Chlorophyll A-B binding protein | 29 | 195 | IPR022796 | - | |
| Bma01g01496 | 229 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 229 | IPR001344 | GO:0009765|GO:0016020 | |
| Bma01g01496 | 229 | Gene3D | Chlorophyll a/b binding protein domain | 20 | 222 | - | - | |
| Bma01g01496 | 229 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC | 1 | 229 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma01g01496 | Bma11g00951 | CCT | |
| Bma01g01496 | Bma14g00970 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g01496 | Bma-Chr1:29519144 | Bma14g00935 | Bma-Chr14:10678062 | 7.77E-164 | dispersed | |
| Bma01g02461 | Bma-Chr1:82186277 | Bma01g01496 | Bma-Chr1:29519144 | 1.13E-66 | transposed | |
| Bma01g02471 | Bma-Chr1:82382934 | Bma01g01496 | Bma-Chr1:29519144 | 1.13E-66 | transposed | |
| Bma01g01496 | Bma-Chr1:29519144 | Bma11g00950 | Bma-Chr11:42441085 | 1.02E-159 | wgd | |
| Bma01g01496 | Bma-Chr1:29519144 | Bma14g00933 | Bma-Chr14:10657380 | 5.30E-162 | wgd | |
| Bma01g01496 | Bma-Chr1:29519144 | Bma14g00969 | Bma-Chr14:11189078 | 1.93E-113 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma01g01496 | K08912 | - | gmx:100805310 | 457.988 |