Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01544 ATGTCCACCATTAGAGCTTATGGGAAGGTCAGTGAAGCCGAGCAACTGATGCTCGACTCACGCCGGAGAACCAGAAAGAGAATTGCTATTATCGTTCTATCCTGCATTGTTCTCGTGGGGGTTGTTCTTGCAGCTGTCTTGGGAACTGCAAGCTCCAGAAATGGAGGAAAATCCAGAAATGATACGCCTCTCTCTACCTCGATCAAAGCAGTCTGCGATGTAACTTTGTACCCAGATAGTTGTTACAGTGCTCTCAATCCTTTGAAAAACTCAAGTCAGATTAGACCGGAGGAGATTTCCAAGATGATAATTCAGGCCGCCATTGATGAGATATCAAAAGCTTCAGACTACATTTTCCACAGCGCTATAAAAAATTCTACCGATAATATGACAGTTCAAGCTTTGGAAAACTGCGAGGAGCTTCTGGATTTAGCTCTAGACCACTTGAATAATTCTCTCTCCTCCTCTGGTTCCTCTCTAACTGACGCCTTTGATGACCTACGAACATGGCTGAGCTCCGCAACTACATATCAACAAACCTGCATAGATGGGTTTGAAGACATTGATGGAGCTTTGAAAAACTCCATTTCTGGGTATTTGCAAAACTCAACTGAATATTCAAGCAACAGCCTCGCCATAGTCACGTGGCTATCGAGCTTCACCGGGGCTCTGAAACTCCGACGACTGATGGAGGCACCCGAGTGGGTGAGTCCGGCGACTCGGCGGCTATTGCAGAGTGATTTGAGGAAGCAGGCGGACATTGTAGTGGCGAAAGATGGGTCAGGGAAGTTTAAGACGATAAACGCGGCGCTGAAGACGGTGAAAAAAAATAGTAATAAGAGGACGGTGATTTACGTGAAGAGGGGAATTTATTACGAGAACGTGGAAGTGGAGAAGACGATGTGGAATGTGGTGATGATCGGAGATGGAATGACTTCCACTATCGTTTCTGCAAGTCTTAACTTCGTTGATGGAACTCCTACTTTCTCATCTGCAACTTTTGCTGCAAAGGGGAAAAACTTCATAGCAATCGACATGGGTTTCCGAAACACCGCCGGACCCAGCAAGCACCAAGCCGTCGCTTTCATGTCCACCTCCGACCAATCCGTCTTCTACCGCTGCCACTTCAACGCCTACCAAGACACTCTCTACGCCCACTCCAACCGCCAATTCTACCGCGAATGTAACGTCTACGGCACCGTCGATTTCATCTTCGGAAACTCCGCTGTCGTCCTCCAAAACACCTTCATCTTCCCACGATTGCCGAGCCCGGGTCAGAAAAACACAATCACAGCTCAGGGAAAGTTCGACCCTAATCAAAACACAGCCATTTCGATTCAGAACTGCTCGGTTATGCCGTTCGGAGACCTGGGTTCTACACAGACGTACCTCGGTCGGCCGTGGAAGAACTACTCGACGACTGTCTACATGCAGAGTAACTTGGGAGGTTTGATCAACCCCGACGGATGGTTACCGTGGGTAGGCGATTCAGCACCAAGCACCATTTTTTATGCCGAGTATCAGAATTATGGAGCTGGTTCTTCGACTTCGAAGAGAGTAAAGTGGAAGGGAGTGAGACAAATCAATGGAGCTCAGGCGAGTAAGTTTACAGTTTCTCAATTTCTTCAAGGGGGGAAGTGGATCTCGGCGGCCGGAGTTCCGTTGAAAGCCAGTCTGTAA 1680 48.04 MSTIRAYGKVSEAEQLMLDSRRRTRKRIAIIVLSCIVLVGVVLAAVLGTASSRNGGKSRNDTPLSTSIKAVCDVTLYPDSCYSALNPLKNSSQIRPEEISKMIIQAAIDEISKASDYIFHSAIKNSTDNMTVQALENCEELLDLALDHLNNSLSSSGSSLTDAFDDLRTWLSSATTYQQTCIDGFEDIDGALKNSISGYLQNSTEYSSNSLAIVTWLSSFTGALKLRRLMEAPEWVSPATRRLLQSDLRKQADIVVAKDGSGKFKTINAALKTVKKNSNKRTVIYVKRGIYYENVEVEKTMWNVVMIGDGMTSTIVSASLNFVDGTPTFSSATFAAKGKNFIAIDMGFRNTAGPSKHQAVAFMSTSDQSVFYRCHFNAYQDTLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNTFIFPRLPSPGQKNTITAQGKFDPNQNTAISIQNCSVMPFGDLGSTQTYLGRPWKNYSTTVYMQSNLGGLINPDGWLPWVGDSAPSTIFYAEYQNYGAGSSTSKRVKWKGVRQINGAQASKFTVSQFLQGGKWISAAGVPLKASL 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34984686 34986454 + Bma001997.1 Bma01g01544 76061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01544 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 219 IPR035513 -
Bma01g01544 559 PANTHER PECTINESTERASE 5 555 - -
Bma01g01544 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 218 IPR035513 -
Bma01g01544 559 Pfam Pectinesterase 253 544 IPR000070 GO:0030599|GO:0042545
Bma01g01544 559 Pfam Plant invertase/pectin methylesterase inhibitor 67 213 IPR006501 GO:0004857
Bma01g01544 559 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Bma01g01544 559 SMART PMEI_2 63 213 IPR006501 GO:0004857
Bma01g01544 559 Gene3D - 248 559 IPR012334 -
Bma01g01544 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 36 217 IPR006501 GO:0004857
Bma01g01544 559 CDD PMEI-like_3 70 219 - -
Bma01g01544 559 PANTHER PECTINESTERASE 5 555 - -
Bma01g01544 559 SUPERFAMILY Pectin lyase-like 251 555 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01544 Bma-Chr1:34984686 Bma10g00666 Bma-Chr10:9652008 3.64E-176 dispersed
Bma10g00706 Bma-Chr10:10721876 Bma01g01544 Bma-Chr1:34984686 1.81E-95 dispersed
Bma01g01544 Bma-Chr1:34984686 Bma14g00847 Bma-Chr14:9437581 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01544 - - mcha:111010791 721.079