Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01587 ATGAAGGAGAGTGCGAGGAAAGAGGGCGCACCATCGCCGTGTGCAGCCTGTAAGCTGCTGAGAAGAAGGTGTGGCGAAGAGTGTGTGTTTGCTCCTTATTTTCCTGCTGATCAACCCCAGAAATTCGCTTGTGTCCACAAGGTCTTTGGTGCTAGTAATGTCAACAAGATGTTGCAGGAGTTGCCGGTCCATCAACAGAGCGATGCTGTAAGTAGTTTGGTTTACGAAGCGAATGCGAGAGTACGGGATCCCGTGTATGGTTGCATTGGCGCCATTTCTTCTCTGCAACAACATATTGATCTTCTTCAGACCCAACTGGCACTGGCTCAAGCTGAGGTGGTGCACCTACGGCTGCTCCAGACGGCATTGTTTTCGAGCCATGGTGTCAGCTCAGCTAGCCATAGTAATCGGCTCCTCGGTTCACATTCCAAGCCCATTTTCGAAATGGACTTGATTGTGGATCATGCCATGTCTGATTCTATTTGGTAA 489 49.69 MKESARKEGAPSPCAACKLLRRRCGEECVFAPYFPADQPQKFACVHKVFGASNVNKMLQELPVHQQSDAVSSLVYEANARVRDPVYGCIGAISSLQQHIDLLQTQLALAQAEVVHLRLLQTALFSSHGVSSASHSNRLLGSHSKPIFEMDLIVDHAMSDSIW 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40187920 40188658 + Bma002063.1 Bma01g01587 76104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01587 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 135 - -
Bma01g01587 162 Coils Coil 92 112 - -
Bma01g01587 162 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Bma01g01587 162 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Bma01g01587 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01587 Bma-Chr1:40187920 Bma08g01029 Bma-Chr8:49439546 2.58E-58 dispersed
Bma03g00702 Bma-Chr3:6241374 Bma01g01587 Bma-Chr1:40187920 4.02E-23 transposed
Bma01g01587 Bma-Chr1:40187920 Bma14g00879 Bma-Chr14:9901680 4.53E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56732 PF03195 LOB 2.60E-42 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01587 - - tcc:18596365 254.218