Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01587 | ATGAAGGAGAGTGCGAGGAAAGAGGGCGCACCATCGCCGTGTGCAGCCTGTAAGCTGCTGAGAAGAAGGTGTGGCGAAGAGTGTGTGTTTGCTCCTTATTTTCCTGCTGATCAACCCCAGAAATTCGCTTGTGTCCACAAGGTCTTTGGTGCTAGTAATGTCAACAAGATGTTGCAGGAGTTGCCGGTCCATCAACAGAGCGATGCTGTAAGTAGTTTGGTTTACGAAGCGAATGCGAGAGTACGGGATCCCGTGTATGGTTGCATTGGCGCCATTTCTTCTCTGCAACAACATATTGATCTTCTTCAGACCCAACTGGCACTGGCTCAAGCTGAGGTGGTGCACCTACGGCTGCTCCAGACGGCATTGTTTTCGAGCCATGGTGTCAGCTCAGCTAGCCATAGTAATCGGCTCCTCGGTTCACATTCCAAGCCCATTTTCGAAATGGACTTGATTGTGGATCATGCCATGTCTGATTCTATTTGGTAA | 489 | 49.69 | MKESARKEGAPSPCAACKLLRRRCGEECVFAPYFPADQPQKFACVHKVFGASNVNKMLQELPVHQQSDAVSSLVYEANARVRDPVYGCIGAISSLQQHIDLLQTQLALAQAEVVHLRLLQTALFSSHGVSSASHSNRLLGSHSKPIFEMDLIVDHAMSDSIW | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 40187920 | 40188658 | + | Bma002063.1 | Bma01g01587 | 76104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01587 | 162 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 135 | - | - | |
Bma01g01587 | 162 | Coils | Coil | 92 | 112 | - | - | |
Bma01g01587 | 162 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
Bma01g01587 | 162 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Bma01g01587 | 162 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 1 | 135 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01587 | Bma-Chr1:40187920 | Bma08g01029 | Bma-Chr8:49439546 | 2.58E-58 | dispersed | |
Bma03g00702 | Bma-Chr3:6241374 | Bma01g01587 | Bma-Chr1:40187920 | 4.02E-23 | transposed | |
Bma01g01587 | Bma-Chr1:40187920 | Bma14g00879 | Bma-Chr14:9901680 | 4.53E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56732 | PF03195 | LOB | 2.60E-42 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01587 | - | - | tcc:18596365 | 254.218 |