Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01602 ATGTTTCAGATCTCAAGTAGATGGCTTCCAGATGAAGCATGCAGGCCTATCATTGGCGAAGCACCTGTATATTATCCAACTATTGAGGAGTTTGAAGATACACTTGGTTACATAGCAAAGATTCGTGAGGAAGCCGAATCATATGGTATATGTCGGATTGTTCCACCATCTTCATGGAATCCACCATGCATTCTAAAGGAGAAAGCCATATGGGAAAATGCCACATTTTCTACACGGATTCAGCTAGTTGACTTGCTACAAAACAGGGAACCCATGAGAAAAAAAAGTAGAGGCAGAAAAAGAAAACGAAGAAAGCATTCAAGAATGGGAATGTCAAGGAGGCGCACAAATCCTGGTTCTGATGCAAACATTTCATCTGAAACTGATGAAAAATTTGGATTCAACTCTGGGTCGAATTTTACTCTAGCTGATTTTCAGAGACATGCTGATTACTTTAAAAAGTGCTACTTTGGGATGAAAGAGGCAGAGGATGAAGTAGATGCCAGTGAAATTAAACCAAAGAAGAGATGGGAACCCTCTGTAGAGGAAATTGAAGGCGAGTACTGGCGGATAGTTGAGAAACCAACGGATGAGGTTGAGGTATACTATGGAGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTTCCCAAGGCATCATCTGCATCAACCGAAAGCAATTCAGATGAGTATATGACTTCTGGGTGGAATCTTAATAACTTTCCACGCTTGCCAGGTTCTGTATTGTGCTTTGAAGGAAGTGATATCTCGGGAGTTCTGGTCCCATGGCTCTATATTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCCTTAAACTATCTACACTTGGGTGATCCAAAAGTTTGGTATGGTGTTCCTGGAAGCCATGCTTCTATCTTAGAAACTACAATGAAGAAGCATTTGCCAGATTTGTTTGAAGAACAGCCAAATTTACTGCATGAGTTGGTTACTCAGCTATCACCTTCGGTTCTCAAATCAGAAGGAGTGCCAGTATATCGTGCTGTTCAACATGCGAGGGAGTTTGTTCTGACATTTCCGAGGGCATACCATTCGGGATTCAATTGTGGTTTTAATTGTGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGTTCATGGTCAAAATGCAGTGGAGCTCTATAGTGAGCAGCGTCACAAGACATCAGTGTCCCATGACAAATTATTACTTGGTTCAGCTCAGGCAGCTGTTCAAGCTCTTTGGGAGATTTTTGTTCTTGGAAAGGAAACTCCTAAAACTTTGAGATGGAAATTTGTGTGTGGGAAAGATGGGGCCCTCACAAAGGCAGTAAAGGCCAGGATACAAATGGAGTCAGAGAGAATGGATTGCCTTCCAATTCATTTGAAGTTGAAAAAGATGGATAGAGAATTTGATTGGGAGGAGAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTATCTGTGGTCAGCTGCAAGTGCTCTCCCTGTCGTTTTTCATGCCTTAAACATGCAAATAAATTTTGTTCTTGTGAAATAGATCAAAGATTTGTTCTCATTCGTTATAGTATAGAGGAACTCGATACACTTGTCGACGCCTTGGAAGGAGGATTAGAATCCATCAAACTATGGGCCAGAGAGAACTGTCAAAAGATTTCTTCTTCCGTTAAAGATGATTATCGTGCAAATATGGAGTTAGAGAGAGAAACATGCAAATCTAAGCCAGACAACTCAGTAGGAAGATTTATCATTTCTGAAGAAACAGGGAAGAAGATGAAAATAGATCTTAATTGTGGTTCATATAGTCATGTATCGTCAGAAGTTGTGCAGTCAGAATTTCGAAACGGATTATCAAGTCTAAGTTCATCCCAGAAACCAAGTGGTAGTAGTAATGCAGTTATCAAATGTGAAAATGTAGACTTGGGAAAAGAAGATCAAATTGTAGACTTGAACAAAAGAGAAGGCTTTATCGATTTAAATCTTGATATTATGCGCGAGGTTAAGGAAATTGGGTGTCTTGAATCGGATGATAGACTAATTGAAAATAAAGTAGAGAAGATTCACTTGTCAGATGGACGGCAAGATGCAAATCCTTTTTCGGACACAAATCATCCTTTGGGCTTGAGAGATTGTGGGAGACAAGATTTTGTTGGTAAGAAGCTGTTCGGAGCTGATGTTGAGTTTCCACCCATACTTTCGAAATCAATACCTAGTAATTTGTCAACAATGAACGTTCAAGATTCCTTTGTACCAGAGCTAATGGACATTGGATCTGCTATGTTTGGAAACCTCTGGTGCAGTAGGCAGGCTATATTTCCAAAAGGATATAGAAGCCGTGTTAAATTCAAAAGTTTGCTTGATCCCATTGTTAGCGGCAGCTATGTATCAGAAGTTCTTGATGCTGGGTTTCTTGGCCCTCTATTCAAGGTTACATCTGAGCAATTTCCGAGTGAGTCTTTTGCAAACGTCTCTGCCGATAAGTGCTGGGAAATGGTTGTGCAGAGAATAAACCAGGAAATGGATAGAAGGATGGGTCAATGTAAAAGACTCCATCCTTTGCAGCCATTGCAAAGAATCAATGGGCTTCAAATGTTTGGTTTTCTCTCCCCACATATTAGACAGGCAATTGAGGCGCTTGATCCAGATCATAGATGCTTGGAGTATTGGAATAACCGGCAGTGCAATGGCGATATAAAAGTTAATTTTCCGTCGAGTCACTCTTCAGAAGTTTCTAGAACAAATGCCTTTGGTATCTTAAAAGGAAGCCTTTCTCCAGACGACGAATTTCAATCCGTGCTAAGAAGGCTGGTAAATAACGCAAGTAGAAGAGACCTAAGCATAATGCATAGTTTTTTCAGCCACGAACATAGAATAGAAGAATGGAGATTGGCTCTAACATCAGTGATTGAAGAGAAGCTAAAAGACTTGGATAGATAA 2958 40.53 MFQISSRWLPDEACRPIIGEAPVYYPTIEEFEDTLGYIAKIREEAESYGICRIVPPSSWNPPCILKEKAIWENATFSTRIQLVDLLQNREPMRKKSRGRKRKRRKHSRMGMSRRRTNPGSDANISSETDEKFGFNSGSNFTLADFQRHADYFKKCYFGMKEAEDEVDASEIKPKKRWEPSVEEIEGEYWRIVEKPTDEVEVYYGADLETGVFGSGFPKASSASTESNSDEYMTSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASILETTMKKHLPDLFEEQPNLLHELVTQLSPSVLKSEGVPVYRAVQHAREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSEQRHKTSVSHDKLLLGSAQAAVQALWEIFVLGKETPKTLRWKFVCGKDGALTKAVKARIQMESERMDCLPIHLKLKKMDREFDWEERECFSCFYDLHLSVVSCKCSPCRFSCLKHANKFCSCEIDQRFVLIRYSIEELDTLVDALEGGLESIKLWARENCQKISSSVKDDYRANMELERETCKSKPDNSVGRFIISEETGKKMKIDLNCGSYSHVSSEVVQSEFRNGLSSLSSSQKPSGSSNAVIKCENVDLGKEDQIVDLNKREGFIDLNLDIMREVKEIGCLESDDRLIENKVEKIHLSDGRQDANPFSDTNHPLGLRDCGRQDFVGKKLFGADVEFPPILSKSIPSNLSTMNVQDSFVPELMDIGSAMFGNLWCSRQAIFPKGYRSRVKFKSLLDPIVSGSYVSEVLDAGFLGPLFKVTSEQFPSESFANVSADKCWEMVVQRINQEMDRRMGQCKRLHPLQPLQRINGLQMFGFLSPHIRQAIEALDPDHRCLEYWNNRQCNGDIKVNFPSSHSSEVSRTNAFGILKGSLSPDDEFQSVLRRLVNNASRRDLSIMHSFFSHEHRIEEWRLALTSVIEEKLKDLDR 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41342084 41347550 + Bma002085.1 Bma01g01602 76119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01602 985 MobiDBLite consensus disorder prediction 93 112 - -
Bma01g01602 985 ProSiteProfiles FYR domain FYRN motif profile. 750 808 IPR003888 GO:0005634
Bma01g01602 985 SMART fyrc_3 814 906 IPR003889 GO:0005634
Bma01g01602 985 SMART fyrn_3 764 808 IPR003888 GO:0005634
Bma01g01602 985 Gene3D - 759 893 - -
Bma01g01602 985 MobiDBLite consensus disorder prediction 113 128 - -
Bma01g01602 985 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 3 982 - -
Bma01g01602 985 Pfam C5HC2 zinc finger 485 537 IPR004198 -
Bma01g01602 985 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Bma01g01602 985 Pfam jmjN domain 22 55 IPR003349 -
Bma01g01602 985 Pfam F/Y rich C-terminus 812 899 IPR003889 GO:0005634
Bma01g01602 985 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 982 - -
Bma01g01602 985 ProSiteProfiles FYR domain FYRC motif profile. 810 899 IPR003889 GO:0005634
Bma01g01602 985 SMART JmjN_1 20 61 IPR003349 -
Bma01g01602 985 Gene3D Cupin 6 380 - -
Bma01g01602 985 SUPERFAMILY Clavaminate synthase-like 229 423 - -
Bma01g01602 985 Pfam JmjC domain, hydroxylase 263 379 IPR003347 -
Bma01g01602 985 ProSiteProfiles JmjC domain profile. 230 396 IPR003347 -
Bma01g01602 985 SMART cupin_9 230 396 IPR003347 -
Bma01g01602 985 MobiDBLite consensus disorder prediction 91 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01602 - - - qsu:111985798 1118.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01602 Bma-Chr1:41342084 Bma14g00592 Bma-Chr14:6405894 2.11E-101 dispersed
Bma07g00902 Bma-Chr7:31532763 Bma01g01602 Bma-Chr1:41342084 5.28E-56 transposed
Bma09g00587 Bma-Chr9:43024875 Bma01g01602 Bma-Chr1:41342084 2.43E-148 transposed
Bma13g00368 Bma-Chr13:6786552 Bma01g01602 Bma-Chr1:41342084 7.64E-35 transposed
Bma13g00412 Bma-Chr13:7580213 Bma01g01602 Bma-Chr1:41342084 3.03E-19 transposed
Bma14g00076 Bma-Chr14:1019152 Bma01g01602 Bma-Chr1:41342084 5.27E-58 transposed
Bma01g01602 Bma-Chr1:41342084 Bma14g00887 Bma-Chr14:10046779 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00368 . 1 1236 JUMONJI Transcription Factor Family AT1G08620 52.8 0.0e+00 1225.3
Bma01g01602 . 3 925 JUMONJI Transcription Factor Family AT1G30810 50.3 3.1e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56734 PF02373 JmjC 2.90E-44 CL0029 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01602 Bma_Chr01 FPKM 175.94101 183.129364 81.774124 82.918106 16.326712 14.854249 15.700736 86.670761 86.88797 83.334846