Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01602 ATGTTTCAGATCTCAAGTAGATGGCTTCCAGATGAAGCATGCAGGCCTATCATTGGCGAAGCACCTGTATATTATCCAACTATTGAGGAGTTTGAAGATACACTTGGTTACATAGCAAAGATTCGTGAGGAAGCCGAATCATATGGTATATGTCGGATTGTTCCACCATCTTCATGGAATCCACCATGCATTCTAAAGGAGAAAGCCATATGGGAAAATGCCACATTTTCTACACGGATTCAGCTAGTTGACTTGCTACAAAACAGGGAACCCATGAGAAAAAAAAGTAGAGGCAGAAAAAGAAAACGAAGAAAGCATTCAAGAATGGGAATGTCAAGGAGGCGCACAAATCCTGGTTCTGATGCAAACATTTCATCTGAAACTGATGAAAAATTTGGATTCAACTCTGGGTCGAATTTTACTCTAGCTGATTTTCAGAGACATGCTGATTACTTTAAAAAGTGCTACTTTGGGATGAAAGAGGCAGAGGATGAAGTAGATGCCAGTGAAATTAAACCAAAGAAGAGATGGGAACCCTCTGTAGAGGAAATTGAAGGCGAGTACTGGCGGATAGTTGAGAAACCAACGGATGAGGTTGAGGTATACTATGGAGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTTCCCAAGGCATCATCTGCATCAACCGAAAGCAATTCAGATGAGTATATGACTTCTGGGTGGAATCTTAATAACTTTCCACGCTTGCCAGGTTCTGTATTGTGCTTTGAAGGAAGTGATATCTCGGGAGTTCTGGTCCCATGGCTCTATATTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCCTTAAACTATCTACACTTGGGTGATCCAAAAGTTTGGTATGGTGTTCCTGGAAGCCATGCTTCTATCTTAGAAACTACAATGAAGAAGCATTTGCCAGATTTGTTTGAAGAACAGCCAAATTTACTGCATGAGTTGGTTACTCAGCTATCACCTTCGGTTCTCAAATCAGAAGGAGTGCCAGTATATCGTGCTGTTCAACATGCGAGGGAGTTTGTTCTGACATTTCCGAGGGCATACCATTCGGGATTCAATTGTGGTTTTAATTGTGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGTTCATGGTCAAAATGCAGTGGAGCTCTATAGTGAGCAGCGTCACAAGACATCAGTGTCCCATGACAAATTATTACTTGGTTCAGCTCAGGCAGCTGTTCAAGCTCTTTGGGAGATTTTTGTTCTTGGAAAGGAAACTCCTAAAACTTTGAGATGGAAATTTGTGTGTGGGAAAGATGGGGCCCTCACAAAGGCAGTAAAGGCCAGGATACAAATGGAGTCAGAGAGAATGGATTGCCTTCCAATTCATTTGAAGTTGAAAAAGATGGATAGAGAATTTGATTGGGAGGAGAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTATCTGTGGTCAGCTGCAAGTGCTCTCCCTGTCGTTTTTCATGCCTTAAACATGCAAATAAATTTTGTTCTTGTGAAATAGATCAAAGATTTGTTCTCATTCGTTATAGTATAGAGGAACTCGATACACTTGTCGACGCCTTGGAAGGAGGATTAGAATCCATCAAACTATGGGCCAGAGAGAACTGTCAAAAGATTTCTTCTTCCGTTAAAGATGATTATCGTGCAAATATGGAGTTAGAGAGAGAAACATGCAAATCTAAGCCAGACAACTCAGTAGGAAGATTTATCATTTCTGAAGAAACAGGGAAGAAGATGAAAATAGATCTTAATTGTGGTTCATATAGTCATGTATCGTCAGAAGTTGTGCAGTCAGAATTTCGAAACGGATTATCAAGTCTAAGTTCATCCCAGAAACCAAGTGGTAGTAGTAATGCAGTTATCAAATGTGAAAATGTAGACTTGGGAAAAGAAGATCAAATTGTAGACTTGAACAAAAGAGAAGGCTTTATCGATTTAAATCTTGATATTATGCGCGAGGTTAAGGAAATTGGGTGTCTTGAATCGGATGATAGACTAATTGAAAATAAAGTAGAGAAGATTCACTTGTCAGATGGACGGCAAGATGCAAATCCTTTTTCGGACACAAATCATCCTTTGGGCTTGAGAGATTGTGGGAGACAAGATTTTGTTGGTAAGAAGCTGTTCGGAGCTGATGTTGAGTTTCCACCCATACTTTCGAAATCAATACCTAGTAATTTGTCAACAATGAACGTTCAAGATTCCTTTGTACCAGAGCTAATGGACATTGGATCTGCTATGTTTGGAAACCTCTGGTGCAGTAGGCAGGCTATATTTCCAAAAGGATATAGAAGCCGTGTTAAATTCAAAAGTTTGCTTGATCCCATTGTTAGCGGCAGCTATGTATCAGAAGTTCTTGATGCTGGGTTTCTTGGCCCTCTATTCAAGGTTACATCTGAGCAATTTCCGAGTGAGTCTTTTGCAAACGTCTCTGCCGATAAGTGCTGGGAAATGGTTGTGCAGAGAATAAACCAGGAAATGGATAGAAGGATGGGTCAATGTAAAAGACTCCATCCTTTGCAGCCATTGCAAAGAATCAATGGGCTTCAAATGTTTGGTTTTCTCTCCCCACATATTAGACAGGCAATTGAGGCGCTTGATCCAGATCATAGATGCTTGGAGTATTGGAATAACCGGCAGTGCAATGGCGATATAAAAGTTAATTTTCCGTCGAGTCACTCTTCAGAAGTTTCTAGAACAAATGCCTTTGGTATCTTAAAAGGAAGCCTTTCTCCAGACGACGAATTTCAATCCGTGCTAAGAAGGCTGGTAAATAACGCAAGTAGAAGAGACCTAAGCATAATGCATAGTTTTTTCAGCCACGAACATAGAATAGAAGAATGGAGATTGGCTCTAACATCAGTGATTGAAGAGAAGCTAAAAGACTTGGATAGATAA 2958 40.53 MFQISSRWLPDEACRPIIGEAPVYYPTIEEFEDTLGYIAKIREEAESYGICRIVPPSSWNPPCILKEKAIWENATFSTRIQLVDLLQNREPMRKKSRGRKRKRRKHSRMGMSRRRTNPGSDANISSETDEKFGFNSGSNFTLADFQRHADYFKKCYFGMKEAEDEVDASEIKPKKRWEPSVEEIEGEYWRIVEKPTDEVEVYYGADLETGVFGSGFPKASSASTESNSDEYMTSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASILETTMKKHLPDLFEEQPNLLHELVTQLSPSVLKSEGVPVYRAVQHAREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSEQRHKTSVSHDKLLLGSAQAAVQALWEIFVLGKETPKTLRWKFVCGKDGALTKAVKARIQMESERMDCLPIHLKLKKMDREFDWEERECFSCFYDLHLSVVSCKCSPCRFSCLKHANKFCSCEIDQRFVLIRYSIEELDTLVDALEGGLESIKLWARENCQKISSSVKDDYRANMELERETCKSKPDNSVGRFIISEETGKKMKIDLNCGSYSHVSSEVVQSEFRNGLSSLSSSQKPSGSSNAVIKCENVDLGKEDQIVDLNKREGFIDLNLDIMREVKEIGCLESDDRLIENKVEKIHLSDGRQDANPFSDTNHPLGLRDCGRQDFVGKKLFGADVEFPPILSKSIPSNLSTMNVQDSFVPELMDIGSAMFGNLWCSRQAIFPKGYRSRVKFKSLLDPIVSGSYVSEVLDAGFLGPLFKVTSEQFPSESFANVSADKCWEMVVQRINQEMDRRMGQCKRLHPLQPLQRINGLQMFGFLSPHIRQAIEALDPDHRCLEYWNNRQCNGDIKVNFPSSHSSEVSRTNAFGILKGSLSPDDEFQSVLRRLVNNASRRDLSIMHSFFSHEHRIEEWRLALTSVIEEKLKDLDR 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41342084 41347550 + Bma002085.1 Bma01g01602 76119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01602 985 MobiDBLite consensus disorder prediction 93 112 - -
Bma01g01602 985 ProSiteProfiles FYR domain FYRN motif profile. 750 808 IPR003888 GO:0005634
Bma01g01602 985 SMART fyrc_3 814 906 IPR003889 GO:0005634
Bma01g01602 985 SMART fyrn_3 764 808 IPR003888 GO:0005634
Bma01g01602 985 Gene3D - 759 893 - -
Bma01g01602 985 MobiDBLite consensus disorder prediction 113 128 - -
Bma01g01602 985 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 3 982 - -
Bma01g01602 985 Pfam C5HC2 zinc finger 485 537 IPR004198 -
Bma01g01602 985 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Bma01g01602 985 Pfam jmjN domain 22 55 IPR003349 -
Bma01g01602 985 Pfam F/Y rich C-terminus 812 899 IPR003889 GO:0005634
Bma01g01602 985 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 982 - -
Bma01g01602 985 ProSiteProfiles FYR domain FYRC motif profile. 810 899 IPR003889 GO:0005634
Bma01g01602 985 SMART JmjN_1 20 61 IPR003349 -
Bma01g01602 985 Gene3D Cupin 6 380 - -
Bma01g01602 985 SUPERFAMILY Clavaminate synthase-like 229 423 - -
Bma01g01602 985 Pfam JmjC domain, hydroxylase 263 379 IPR003347 -
Bma01g01602 985 ProSiteProfiles JmjC domain profile. 230 396 IPR003347 -
Bma01g01602 985 SMART cupin_9 230 396 IPR003347 -
Bma01g01602 985 MobiDBLite consensus disorder prediction 91 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01602 Bma-Chr1:41342084 Bma14g00592 Bma-Chr14:6405894 2.11E-101 dispersed
Bma07g00902 Bma-Chr7:31532763 Bma01g01602 Bma-Chr1:41342084 5.28E-56 transposed
Bma09g00587 Bma-Chr9:43024875 Bma01g01602 Bma-Chr1:41342084 2.43E-148 transposed
Bma13g00368 Bma-Chr13:6786552 Bma01g01602 Bma-Chr1:41342084 7.64E-35 transposed
Bma13g00412 Bma-Chr13:7580213 Bma01g01602 Bma-Chr1:41342084 3.03E-19 transposed
Bma14g00076 Bma-Chr14:1019152 Bma01g01602 Bma-Chr1:41342084 5.27E-58 transposed
Bma01g01602 Bma-Chr1:41342084 Bma14g00887 Bma-Chr14:10046779 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56734 PF02373 JmjC 2.90E-44 CL0029 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01602 - - qsu:111985798 1118.99