Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01606 ATGGAGAACACAGGTGATTTAACAGATATTATTCGAGCTAGTGGAGGAATCTATGGCTGTGGAGAAGCAGATTCTAATTCAAACACAAACCCTAGTTCAAACTGGCAATTTTCCTCCGAGCCCATGAATTTTTCTTCAGATTCTCTGGAAACTTTTGGAGATCCATTTTCCTCTACGAGAGATCCGCTGCGCCAGCTGCATGATATCTCTGCGTCTTCTTCCAGTATCATCAGTGCAATTGGTTGTGAAGAATCCGTCGGCTTTCCGGGAGTATTTTCCGGCGATTCAATCATTCTTCCTCAGAGAATTTTTCGTGATGAGATTAGAACTCCTCGAAATATTTTTTCCCGTGCGCCTCAAATCTCTCCAACCACTATATTGCCTCTTACTTCTTGCGATCCACCATTGATGATCAATTCTCCAAGCTCAATTAAGTCTTCTTCCATGGTTTCCAATGACATAATTAATCCAATCGGCTTGAACAGTTGCTTAGTCGACAACTCAACTATCCAGATCTCTTCCCCAAGAAATTCGGGTATCAAAAGAAGGAAGAGCCAGGCAAAGAAGGTTGTATGTATTCCAGCTCCAGCGCCTGCAAATAGTAGACCAAGTGGTGAAGTTGTTCCTTCTGATCTCTGGGCATGGAGAAAATATGGACAGAAACCCATTAAAGGTTCTCCATATCCAAGAGGATATTATAGATGTAGTAGCTCAAAAGGATGTTCAGCACGAAAACAAGTGGAGAGGAGCAGAACTGATCCAAACATGTTAGTCATCACCTACACTTCAGAGCATAACCATCCATGGCCGACTCAACGAAATGCTCTTGCAGGCTCAACCCGTTCGCAACCATCAAGAAACAGCAGCAATGGAGATGCTTCAAAGCCCTCTAATGGCGGTCAGAGCCAAAAGATGACAAGTCCGAAGGAGGAGGAAGACGAAGAAGAACAGATGAAGGAAAATGGTGTTTCATCTGGTTTGTATGTTAAAGAAGAGATGGAGGAAGATCAGATCAAAGGGCTCGTAATGGAAGATGAAGATCAGTTTATTGAAGCATTTTCTGGGTCTACTTCTGAGGATTTCTTCGCTGATTTGGGTGAAATACAAACTGATAGTTCTTTGAACCTCATTTTCGCGGAAGCTTTGTCGGGAAACAAACAGAAAGATGGAAAGGCCTTGGAGTACCCGTTTCCTCTATTTGATTGGACAGGAATCATCTCCACCCCCAACTCATCTTCATTCCATCAACAGAAGAAAGATTCTTGA 1266 42.89 MENTGDLTDIIRASGGIYGCGEADSNSNTNPSSNWQFSSEPMNFSSDSLETFGDPFSSTRDPLRQLHDISASSSSIISAIGCEESVGFPGVFSGDSIILPQRIFRDEIRTPRNIFSRAPQISPTTILPLTSCDPPLMINSPSSIKSSSMVSNDIINPIGLNSCLVDNSTIQISSPRNSGIKRRKSQAKKVVCIPAPAPANSRPSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSRNSSNGDASKPSNGGQSQKMTSPKEEEDEEEQMKENGVSSGLYVKEEMEEDQIKGLVMEDEDQFIEAFSGSTSEDFFADLGEIQTDSSLNLIFAEALSGNKQKDGKALEYPFPLFDWTGIISTPNSSSFHQQKKDS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41617230 41619579 + Bma002091.1 Bma01g01606 76123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01606 421 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 4 404 - -
Bma01g01606 421 Gene3D WRKY domain 183 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01606 421 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01606 421 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 404 IPR044810 GO:0003700
Bma01g01606 421 Pfam WRKY DNA -binding domain 211 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01606 421 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01606 421 SUPERFAMILY WRKY DNA-binding domain 207 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01606 421 MobiDBLite consensus disorder prediction 253 305 - -
Bma01g01606 421 MobiDBLite consensus disorder prediction 234 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01606 Bma-Chr1:41617230 Bma04g00895 Bma-Chr4:11869179 5.28E-43 dispersed
Bma01g01606 Bma-Chr1:41617230 Bma14g00891 Bma-Chr14:10081084 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56735 PF03106 WRKY 2.30E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01606 - - jre:108988835 403.675