Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01699 ATGGCTTCACCGTCTCTCCTCCTGCTGCTCTCGTGCTGTCTAGCATGCATTGCTTCGTCCTTGCAGGAGAATTCCTATACCGTCAGCACTCCCGGGCCCAAACTGAAAGCGTTGAACGTAATCGACGCTTGCTGGCGCTCCAAGCCCAGTTGGGCCGCCAACCGACAGTCATTGGCAGACTGCGCAGTCGGTTTTGGAAAAGGCGCGCTTGGAGGGAAGTTTGGAGCTATCTACGTTGTCACTGATTCTTCCGATGACCCGGTGAACCCAAAACCCGGGACGTTACGCTACGGTGTGATTCAGTTAAAGCCATTGTGGATCGTTTTTGCTAGGAGCATGGTTATTGTACTAAAAAATGAGCTTATTGTGACTAGTTACAAGACAATTGATGGGAGAGGGGTGAATGTGGAAATTACATATGGACCCTGCATCACCTTGCAATACGTAAGCCATGTTATTATTCATGGAATTAGCATTCACGACTGTAAACCAGGTAAGGCTGGGCTTGTTCGGAGCAGCACCGCACATGTCGGACGTCGTCAAGGCTCAGATGGAGACGCCATTTCCATCTACGGGTCTTCTAATATTTGGATAGACCACTGCTTCCTCGCCCACAGCGCTGACGGCCTCATCGATATCATACATGCCTCTACTGCAATCACCGTCTCTAACAACTACTTCACTCAGCATGACAAAGTGATGCTGCTCGGACACAATGATAAGTACGCGGATGATAAAGTGATGAAAGTCACCATAGCGTTCAACCGCTTCGGTGCTGGCCTCATTGAAAGGATGCCCAGGGTAAGATTTGGCTACGCCCATGTTGCCAACAATAAATATGAGGAGTGGCAGATGTACGCCATTGGCGGAAGTGCTAATCCAACCATATTCAGTGAAGGAAACTACTTCGTGGCACCTAATCAACGTTTTTCGAAACAGGTTACAAAAAGAGAGGTGAAAAGTGGTTGGAAGGACTGGAAATGGAGGTCTTCTCGGGATGTATTTATGAATGGTGCTTACTTTGTGCAATCTGGATGGGGAAGTTGTAGTCCAAATTACAGTTCATATCAGTCGTTTCCGGTTGCTCCAGGCGCCTTGGTTCCTGCTTTAACTGTCGGTGCAGGACCTTTAGTTTGCTACATTGGTAAAGCATGC 1155 48.31 MASPSLLLLLSCCLACIASSLQENSYTVSTPGPKLKALNVIDACWRSKPSWAANRQSLADCAVGFGKGALGGKFGAIYVVTDSSDDPVNPKPGTLRYGVIQLKPLWIVFARSMVIVLKNELIVTSYKTIDGRGVNVEITYGPCITLQYVSHVIIHGISIHDCKPGKAGLVRSSTAHVGRRQGSDGDAISIYGSSNIWIDHCFLAHSADGLIDIIHASTAITVSNNYFTQHDKVMLLGHNDKYADDKVMKVTIAFNRFGAGLIERMPRVRFGYAHVANNKYEEWQMYAIGGSANPTIFSEGNYFVAPNQRFSKQVTKREVKSGWKDWKWRSSRDVFMNGAYFVQSGWGSCSPNYSSYQSFPVAPGALVPALTVGAGPLVCYIGKAC 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51761013 51762696 - Bma030262 Bma01g01699 76216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Bma01g01699 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Bma01g01699 385 SUPERFAMILY Pectin lyase-like 39 376 IPR011050 -
Bma01g01699 385 Gene3D - 38 378 IPR012334 -
Bma01g01699 385 SMART amb_all 112 309 IPR002022 -
Bma01g01699 385 PANTHER PECTATE LYASE 18-RELATED 14 384 IPR045032 GO:0030570
Bma01g01699 385 Pfam Pectate lyase 119 303 IPR002022 -
Bma01g01699 385 PANTHER PECTATE LYASE 14 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01699 Bma-Chr1:51761013 Bma14g01573 Bma-Chr14:32423807 0 dispersed
Bma08g00134 Bma-Chr8:1745547 Bma01g01699 Bma-Chr1:51761013 4.87E-103 dispersed
Bma08g00137 Bma-Chr8:1806437 Bma01g01699 Bma-Chr1:51761013 2.03E-103 dispersed
Bma08g01130 Bma-Chr8:50205174 Bma01g01699 Bma-Chr1:51761013 2.75E-51 dispersed
Bma01g01699 Bma-Chr1:51761013 Bma06g00238 Bma-Chr6:3163295 6.48E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01699 K01728 - zju:107419217 590.112