Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01714 ATGGCCGTATCTCCCAAAGCTTTTCCTTTGAGAAAGCGGCGGCCATCGGCCGGAGCTTTCATATCTCCCAAATTAACGGGCATCAATCTCCTCCAATCACTCCTCTTCCTCTGTCGAGAAATTACGTCGATGAAGCCCCCTGACTTCCCCCTCAAGCGCAATTCCCTCTCCCTCATTCGCAAAACCAAGATCCTCGCTGCTCTTTTTGAAGAGCTTCTTCAAAATCCTCTCTCATCCTCCCACTCCGCCTCCCTTTGTTTAGAAGAAATGTACGTCGTTTTGCAGAGAATCAAAGCTCTGATCGAAGACTGTTCCGTTGGAAGCAAGATGTGGCTGCTCGTGCAGATTGAATCCCTGGCTGATAATTTTCAGGAGCTCACAGTTGATTTATCGACTCTGCTTGATATTATACTGGTCAAAAAGGCTGGTTTGAATGAGGACGTGAAAGAACTCGTTTGTTTACTCAGAAAACAGTGTTTGGAATCCAAAGCTTTGGTTGATCCGAGAGATGCCGATCTAAGACTGCAGGTTTTAACGATGCTTGATCAGATCAAAAACGAAATTGTTCCCGATGATACCAAGCTTTCAGAAATTTTCTCCAAGTTAGGGATAACCGACTCCTCGAGCTGCAGAGAGGAAATCGAGAATCTCGAAGACGAAGTTCAGAATCAAACGGATCAAAAGTCAAAGGCCGACACGATCGCTCTGATAGGGCTCGTTCGATACACGAAATGCGTTCTCTTCGGAGCCTCCACGCCTGATAAAGTCTATCAGCCGATGAAATCGATGACAGAAATGGGAATACCGGCCGATTTCAGGTGTCCGATTAGCCTCGAAATGATGAAAGATCCGGTGGTCATCGCAACAGGACAGACGTACGATCGGGCATCCATCAGCTTCTGGATTGAATCTGGACACAACACGTGTCCCAAGACAGGTCAGACCCTGCCCCACACGAACCTAATCCCCAACCGAGCGTTGAGAAACTTGATAGCGATGTGGTGCCGTCATCATAGAATCCCCTTCGATACGACGGAGAGGGGAGAGGGAGTCAATGGGACTCCGACGAACAAGGCGGCGATTGAAGCGACGAGAATGACTGCGTCGTTTCTCGTGAACAAGCTATCTGCCTCTCAGTCACCGGAGGCTGCTAATAGCATTGTCTATGAGCTGCGCGTTCTGGCCAAAACGGACTCCGACTGCCGAGGATTCATCGCCGAGGCGGGAGCAATTCCCCTGCTGGTTGGTTTCCTAAACTCGAAGCACCCTAACCTACAGGTTAACGCTGTAACGACGATCCTCAATCTTTCCATCCTCGAAGCGAACAAGAGGAGGATAATGGAGATGGAGGGAGCTTTAAGCGGTATCGTGGAAGTGATTCATTCAGGCGCGATGTGGGAGGCGAAGGGAAATGCGGCGGCTACGGTGTTCAGCTTGTCCGCTGACCACTCGTACAGAAGGAGAATTGGAAGGAAGACGGGTTTGATTAAGGCGTTGTTGGATTTAGCGGAGGAAGGGCCGGGCAATTCGAAGAGAGATGCGATGATGGCGATTATGAATCTGGCGGCTGATAGGGAGACGGTTGGGCGATTGATTGAGGGTGGAGTGATGGGGACGGTCAGACATCTTATCGATGAACTACCAGAGGAGGCGGTGACCATCCTGGAGGTGGTGGTGAGAAGGGGAGGAGTGCCAGCAGTTGCTTCATCGTACAACTTCATGAAGAAATTAAGCTCGTTGTTCAGGAACGGTTCCGACAGAACAAGGGAGAGTGCAGCGGCGACGCTGGTCAACATTTGCCGGAAAGGTGGCTCGGAGGCGGTAGCTGAAGTTGCAGCGATTCCGGGGATAGAGAGACTTGTGTGGGAGGTCATGGAAAGTGGAACTCCGAGAGGAAGAAGAAAAGCTGCGTCGCTCATGAGGATTCTACGACGATGGGCGGCCGGCCTGGGCGGCAACAGTTCGATTCCGGATTCATCGAGAACGTCCTTGGCAGTGGGAATCACGATCACCCATTAA 2019 50.87 MAVSPKAFPLRKRRPSAGAFISPKLTGINLLQSLLFLCREITSMKPPDFPLKRNSLSLIRKTKILAALFEELLQNPLSSSHSASLCLEEMYVVLQRIKALIEDCSVGSKMWLLVQIESLADNFQELTVDLSTLLDIILVKKAGLNEDVKELVCLLRKQCLESKALVDPRDADLRLQVLTMLDQIKNEIVPDDTKLSEIFSKLGITDSSSCREEIENLEDEVQNQTDQKSKADTIALIGLVRYTKCVLFGASTPDKVYQPMKSMTEMGIPADFRCPISLEMMKDPVVIATGQTYDRASISFWIESGHNTCPKTGQTLPHTNLIPNRALRNLIAMWCRHHRIPFDTTERGEGVNGTPTNKAAIEATRMTASFLVNKLSASQSPEAANSIVYELRVLAKTDSDCRGFIAEAGAIPLLVGFLNSKHPNLQVNAVTTILNLSILEANKRRIMEMEGALSGIVEVIHSGAMWEAKGNAAATVFSLSADHSYRRRIGRKTGLIKALLDLAEEGPGNSKRDAMMAIMNLAADRETVGRLIEGGVMGTVRHLIDELPEEAVTILEVVVRRGGVPAVASSYNFMKKLSSLFRNGSDRTRESAAATLVNICRKGGSEAVAEVAAIPGIERLVWEVMESGTPRGRRKAASLMRILRRWAAGLGGNSSIPDSSRTSLAVGITITH 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53690536 53692554 - Bma002297.1 Bma01g01714 76231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01714 672 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Bma01g01714 672 Pfam U-box domain 268 339 IPR003613 GO:0004842|GO:0016567
Bma01g01714 672 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Bma01g01714 672 Gene3D - 27 139 IPR036537 GO:0007166
Bma01g01714 672 Gene3D - 351 537 IPR011989 -
Bma01g01714 672 SUPERFAMILY ARM repeat 370 643 IPR016024 -
Bma01g01714 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 342 IPR013083 -
Bma01g01714 672 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Bma01g01714 672 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 659 - -
Bma01g01714 672 SUPERFAMILY RING/U-box 262 341 - -
Bma01g01714 672 SMART arm_5 560 601 IPR000225 GO:0005515
Bma01g01714 672 SMART arm_5 398 438 IPR000225 GO:0005515
Bma01g01714 672 CDD RING-Ubox_PUB 272 314 IPR045210 -
Bma01g01714 672 Gene3D - 538 650 IPR011989 -
Bma01g01714 672 Coils Coil 207 234 - -
Bma01g01714 672 PANTHER U BOX DOMAIN-CONTAINING 11 659 - -
Bma01g01714 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01714 Bma-Chr1:53690536 Bma14g00979 Bma-Chr14:11398426 3.74E-138 dispersed
Bma01g01714 Bma-Chr1:53690536 Bma11g00122 Bma-Chr11:1154400 6.68E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01714 - - tcc:18602242 877.47