Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01718 ATGGAAGAGAAGGGGAGTGTATTAATGCATCGTTATGAATTAGGAAGATTGCTAGGCCAGGGTACTTTTGCCAAGGTACACTATGCGCGAAATCTCGTGTCCGGAACGAGCGTGGCCATTAAAATTATCGACAAGGAGAGGGTCGTCAAGGTTGGACTGATTGATCAGATCAAGAGAGAAATTTCTGTCATGAGACTGGTTAGGCACCCGAATGTGGTCGAGCTTTACGAAGTGATGGCAAGCAAAACTAAGATCTACTTCATTATGGAGTACGTGAAAGGCGGGGAGTTGTTCGACAAGGTCACCAAAGGAAAGCTGAAGGAGGATATTGCCCGGACATATTTTCAGCAGCTGATCAGCGCGGTCGATTACTGCCACAGCAGAGGCGTGAGTCATCGGGATTTAAAACCGGAAAACTTGCTGTTGGATGAACATGGCAACTTAAAAGTTTCTGATTTTGGATTGAGTGCAGTTGCTGATTCTAAGAGACAAGATGGATTGCTTCACACGACCTGTGGAACTCCGGCTTATGTTGCTCCTGAAGTGATTACAAGGAATGGTTATGACGGATCCAAAGCGGATATTTGGTCGTGTGGAGTGATTTTATATGTTTTGTTGGCTGGTTATCTACCTTTCCATGATTCTAATATAATTGAGTTGTATAGAAAGATTGAGAAGGGGGAAGTCAAGTACCCGAAATGGTTCGCGTTGGAAGTGCGACTATTGCTGTCAAAAATATTGGATCCAAACCCGAATACACGGATATCCATATCCGAAATCATGGAAAATTCTTGGTTCAGGAAGGGATTAGCAGACTCCGAACCTCAAGTTAATTTAGTAGAGGGGAATGAAGCATCTCAAGTGAATGCTGAAGGAGTTTTTGAAGCTAATGAGAGAATGGACTCTTCTTCAGAGCTAAAACAAGTGGCAAAGCCTTGTAACTTGAATGCGTTCGATATAATTTCGTTCTCGTCCGGGTTTGATTTGTCTGGTCTGTTTGATGGGATTGACCGGACGAAAGAAACACGATTCTCGTCAAACAAGCCTGCAAACACTATCATCTCGAGGTTGGAAGACATGGCCAAGCGTCTGAGAATGAAGGTGAAAAAGAAAGAAGCTGGGCTGCTGAAAATCCAAGCATCAAAAGAAGGCCGAAAAGGCGTCTTAGAAATTGATGCGGAGATTTTCGAGATTACCCCGATGTTTCATATTGTGGAAATGAAGAAGACAAGCGGAGACACCCTGGAATTCGATAGGACGATGAAACAAGATATAAGGCCAGCCCTGAAGGACATTGTTTGGACTTGGCAGGGGGAGAGGCGCAAATCCAACAACTCCCTCCGTCCAACATAG 1353 44.27 MEEKGSVLMHRYELGRLLGQGTFAKVHYARNLVSGTSVAIKIIDKERVVKVGLIDQIKREISVMRLVRHPNVVELYEVMASKTKIYFIMEYVKGGELFDKVTKGKLKEDIARTYFQQLISAVDYCHSRGVSHRDLKPENLLLDEHGNLKVSDFGLSAVADSKRQDGLLHTTCGTPAYVAPEVITRNGYDGSKADIWSCGVILYVLLAGYLPFHDSNIIELYRKIEKGEVKYPKWFALEVRLLLSKILDPNPNTRISISEIMENSWFRKGLADSEPQVNLVEGNEASQVNAEGVFEANERMDSSSELKQVAKPCNLNAFDIISFSSGFDLSGLFDGIDRTKETRFSSNKPANTIISRLEDMAKRLRMKVKKKEAGLLKIQASKEGRKGVLEIDAEIFEITPMFHIVEMKKTSGDTLEFDRTMKQDIRPALKDIVWTWQGERRKSNNSLRPT 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53850625 53851977 - Bma002304.1 Bma01g01718 76235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01718 450 CDD CIPK_C 316 430 - -
Bma01g01718 450 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01718 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Bma01g01718 450 Coils Coil 354 374 - -
Bma01g01718 450 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01718 450 PANTHER - 2 443 - -
Bma01g01718 450 ProSitePatterns Protein kinases ATP-binding region signature. 18 50 IPR017441 GO:0005524
Bma01g01718 450 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 443 - -
Bma01g01718 450 Pfam NAF domain 312 370 IPR004041 GO:0007165
Bma01g01718 450 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Bma01g01718 450 Gene3D Kinase associated domain 1, KA1 314 435 - -
Bma01g01718 450 Gene3D Phosphorylase Kinase; domain 1 6 98 - -
Bma01g01718 450 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01718 450 SUPERFAMILY Protein kinase-like (PK-like) 8 280 IPR011009 -
Bma01g01718 450 CDD STKc_SnRK3 11 265 - -
Bma01g01718 450 Gene3D Transferase(Phosphotransferase) domain 1 99 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01718 Bma-Chr1:53850625 Bma07g00833 Bma-Chr7:27670098 0 dispersed
Bma01g02707 Bma-Chr1:84475827 Bma01g01718 Bma-Chr1:53850625 2.11E-26 transposed
Bma07g00049 Bma-Chr7:1389845 Bma01g01718 Bma-Chr1:53850625 1.86E-110 transposed
Bma01g01718 Bma-Chr1:53850625 Bma14g01563 Bma-Chr14:32256749 2.32E-130 wgd
Bma01g01718 Bma-Chr1:53850625 Bma04g01261 Bma-Chr4:38235269 1.59E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66287 PF00069 Pkinase 4.70E-74 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01718 K07198 - cit:102619997 678.707