Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01743 ATGGATATGGCTACGAGTCCACGCACCGTTGAGGAGATCTACAGAGATTACAGTGCCAGAAGAACTGGTGTTGTCCGCGCTTTGACTCTTGATGTGGATGAATTCTATAGTCTCTGTGATCCAGACAAGGAAAACTTGTGTCTTTACGGACACTCAAATGAAGCCTGGGAAGTAACTCTTCCTGCAGAGGAGGTTCCACCCGAGCTTCCGGAGCCAGTACTTGGAATAAATTTTGCGAGAGATGGGATGAATCGCAAAGACTGGATTTCGTTAGTAGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTTTCTATCTTGGAGCCCGCCTTAACATGGCCGAAAGGAAGCATCTTTTTAGCTTGATCAATGATTTACCAACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCTATTAAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATTAAGCACAAAGAGATCAAATGATGGTCAAGTGAAAAGCAACACAAAGGCTGCAGAAGAAAATTATGAAGAAGACGAAGACAAACTCAACGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAATTCTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCATGGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA 720 45.14 MDMATSPRTVEEIYRDYSARRTGVVRALTLDVDEFYSLCDPDKENLCLYGHSNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLAVAFYLGARLNMAERKHLFSLINDLPTVFEVVTERKPIKENPSVDSGSKSRLSTKRSNDGQVKSNTKAAEENYEEDEDKLNETLCGSCGGNYSADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCSMKKGRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55957108 55959114 - Bma002354.1 Bma01g01743 76260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01743 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Bma01g01743 239 Pfam PHD-finger 186 234 IPR019787 -
Bma01g01743 239 MobiDBLite consensus disorder prediction 140 176 - -
Bma01g01743 239 MobiDBLite consensus disorder prediction 144 168 - -
Bma01g01743 239 Coils Coil 164 184 - -
Bma01g01743 239 SUPERFAMILY FYVE/PHD zinc finger 173 237 IPR011011 -
Bma01g01743 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Bma01g01743 239 SMART PHD_3 185 233 IPR001965 -
Bma01g01743 239 CDD PHD_AL_plant 185 235 IPR044104 -
Bma01g01743 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Bma01g01743 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Bma01g01743 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Bma01g01743 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01743 Bma-Chr1:55957108 Bma08g01024 Bma-Chr8:49360028 5.07E-132 dispersed
Bma03g00247 Bma-Chr3:1912905 Bma01g01743 Bma-Chr1:55957108 1.91E-25 dispersed
Bma01g01743 Bma-Chr1:55957108 Bma01g01801 Bma-Chr1:63399518 1.05E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56740 PF12165 Alfin 1.10E-65 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01743 - - qsu:112019782 431.409