Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01776 GAGATGAAGGAGAAGACCCATTTCAACCTTACCTTCACTCTCTCGCTTTTTGTTGTTTTTCATCTTGCTTCTTTGGTGTCCCTCTGTAATGGAGGCTTCGTCATTTCTAGCCATGGCGGTCTCACTGACGCTGAGGCTTTGTATATCAGAAAGCGTCAGCTTCTTTACTACAGAGACGAGTTCGGCGATCGAGGTGAGAATGTAACCGTCGATTCTTCTCTTGTTTTTCAAAACGAACGGCTCAGAAATGCCTATGTTGCTTTACAAGCATGGAAGCAAGCTATTTTATCTGACCCTTTGAATCTTACCGAGAATTGGGTTGGATCTGATGTCTGTGACTATCATGGGGTTTACTGTGCTCCGGCGCCGGACAATCACAAGATCTTAACGGTCGCCGGAATCGATCTAAACCACGGCGACATTGCTGGGTACTTACCGGAAGAGCTCTGTCTACTTGTAGATCTTGCATTGTTCCACATCAACTCTAATCGGTTTTGTGGTACTGTTCCTCACAAGTTTGAACGCCTGAAACTGCTCTACGAGCTGGATCTCAGTAACAATAGGTTCGCCGGGAAGTTTCCAGTGGTGGTTCTTAAGCTTCCATCGCTTAAATTTTTGGATCTGAGGTATAATGAGTTCGAAGGTACTATACCAAGCGACCTGTTTGATAAAGATTTGGATGCTATATTTATTAATCATAACAGGTTTAGATTTGAGCTACCGGAAAATTTCGGAAATTCTCCAGTCTCTGTTATCGTTCTTGCTAACAATAAATTCCATGGTTGTGTTCCTTCGAGCTTGGGTAATATGTCGAGGCTGAACGAGATTATTATGATGAACAATGGGTTCCGATCGTGTTTACCCCCCGAGATTGGGTTGCTGAAAAATTTGACGGTGTTTGATGTGAGTTTCAATGAGCTGCTTGGTCCGTTGCCGGAAGAAATAGGGGGCATGGTCAGTTTGGAGCAGCTTAATGTGGCTCATAATCTTCTCTCCGGGAAGATTCCGGCCAGTATTTGTAAACTTCCCAATCTGCAGAATTTCACTTTCTCATATAACTTCTTTACCGGTGAGCCGCCGGCGTGCTTGGGGCTTTCAGATTTCGACGACCGAAGAAACTGCTTGCCTCAGCGGCCGCTCCAGAGGTCTGGCAAGCAATGTAAGTCGTTTTTGTCCAAGCCGGTTGACTGTGGCTCGTTTAGATGTAAACCTTTTGTTCCTACTTTACCGCCGCCACCTCCTCCGTCTCCCCCTGTCTTCCCTCCGCCGCCGGTTGCTATTCCCTCTCCCCCACCTTCACCTATTTACTCTCCACAATCGCCCCCACCACCTCCCGTTTATTCTCCTCCCCCACCACCTTCTCCGCCTCCACCAATTTACTTTTCCCCTCCGCCACCTTCTCCACCGCCTCCAGTTTACTCTCCTCCTCCTCCGCCTCCACCACCTCCACCTATTTACTCTCCACCACCACCTCCACCTATTTACTCTCCTCCACCACCACCTCCACCTAGTTACTGTCCACCACCTCCTCCTCCTTTATACTCTTCGCCGCCGCCGCCTCCTATCTACTCTCCTCCACCACCTGCACCGCCACCACCGCCACCACCACCGCCACCTCCACCACCTCCTCCACCTCCTCCCCACATATTTTATCACTCTCCACCTCCGCACTCAGTTCATCACCCTCCTCCACCTCCTCCGATTGGCTGTGAAACTCCGGCTTCTCCACTACCATCACCAATACATGTGCATGAAAATCCTCCGCCTGCTACCCCGTCATATGAAGGGCCATTACCGCCCATACGCGGAGTTTCATACGCATCTCCTCCGCCCCCACCCTTTTATTGA 1848 49.51 EMKEKTHFNLTFTLSLFVVFHLASLVSLCNGGFVISSHGGLTDAEALYIRKRQLLYYRDEFGDRGENVTVDSSLVFQNERLRNAYVALQAWKQAILSDPLNLTENWVGSDVCDYHGVYCAPAPDNHKILTVAGIDLNHGDIAGYLPEELCLLVDLALFHINSNRFCGTVPHKFERLKLLYELDLSNNRFAGKFPVVVLKLPSLKFLDLRYNEFEGTIPSDLFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPSSLGNMSRLNEIIMMNNGFRSCLPPEIGLLKNLTVFDVSFNELLGPLPEEIGGMVSLEQLNVAHNLLSGKIPASICKLPNLQNFTFSYNFFTGEPPACLGLSDFDDRRNCLPQRPLQRSGKQCKSFLSKPVDCGSFRCKPFVPTLPPPPPPSPPVFPPPPVAIPSPPPSPIYSPQSPPPPPVYSPPPPPSPPPPIYFSPPPPSPPPPVYSPPPPPPPPPPIYSPPPPPPIYSPPPPPPPSYCPPPPPPLYSSPPPPPIYSPPPPAPPPPPPPPPPPPPPPPPPHIFYHSPPPHSVHHPPPPPPIGCETPASPLPSPIHVHENPPPATPSYEGPLPPIRGVSYASPPPPPFY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 60490675 60492522 + Bma002417.1 Bma01g01776 76293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01776 615 MobiDBLite consensus disorder prediction 430 451 - -
Bma01g01776 615 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 465 - -
Bma01g01776 615 PRINTS Proline rich extensin signature 431 443 - -
Bma01g01776 615 PRINTS Proline rich extensin signature 410 426 - -
Bma01g01776 615 PRINTS Proline rich extensin signature 445 466 - -
Bma01g01776 615 Gene3D Ribonuclease Inhibitor 83 246 IPR032675 -
Bma01g01776 615 Gene3D Ribonuclease Inhibitor 247 375 IPR032675 -
Bma01g01776 615 MobiDBLite consensus disorder prediction 544 596 - -
Bma01g01776 615 SUPERFAMILY L domain-like 85 364 - -
Bma01g01776 615 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 465 - -
Bma01g01776 615 MobiDBLite consensus disorder prediction 544 615 - -
Bma01g01776 615 Pfam Leucine rich repeat 157 212 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01776 Bma-Chr1:60490675 Bma07g00523 Bma-Chr7:6647320 5.18E-99 dispersed
Bma01g00662 Bma-Chr1:6041389 Bma01g01776 Bma-Chr1:60490675 3.28E-60 transposed
Bma04g00050 Bma-Chr4:481208 Bma01g01776 Bma-Chr1:60490675 8.55E-166 transposed
Bma07g00628 Bma-Chr7:9978128 Bma01g01776 Bma-Chr1:60490675 4.80E-07 transposed
Bma01g01776 Bma-Chr1:60490675 Bma07g00478 Bma-Chr7:5791624 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01776 - - pvy:116114776 683.33