Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01790 ATGAGACCGTACGGACGCACAGCCCACAACATGTCATCCTCCTCTCTGCGGAAAAAATCGGACTTGACCATTGTTTCTAAAGTGAGGTTTGGTTGTCTCAGAAAGCTTCTGATTAATCTCCAGGAAGTTATTTTGGGGACCAAACTTTCTGTTCTTTTTCCTGCTATCCCTCTCGCCATTGCTGCTGAGTTTTATGGCTTTGGAAGACCATGGATTTTCGGGCTGAGCTTACTTGGACTTACACCACTGGCAGAACGTGTTAGCTTTCTGACAGAACAAATTGCTTATTACACTGGCTCTACAGTGGGAGGACTATTGAATGCAACGTGTGGAAATGCTACAGAGCTTATTATTGCAGTATTGGCGCTTTCCAAAAGGAAAATAGAAGTGGTGAAGTATTCTCTTCTGGGTTCTGTTCTTTCAAATCTTCTCCTTGTCCTTGGGACCTCTCTCTTTTGTGGCGGTCTTGCAAATCTTAAGAAAGAACAGAAATTTGACAGACGGCAAGGTGATGTGAACTCTCTGATGCTTCTGCTATCCCTACTGTGTCACTTGCTGCCTTTGCTCTTCACTCTTGCTGGAGCCTCAGCTGCTGTAACAACATTTCCAACTCTCGCATTGTCAAGAGCGAGCAGCATAATAATGCTTGTTGCCTACATTGCTTACATAGTTTTCCAATTATGGACTCATCGCCAGCTATTTGAAGCACAGGACTCAGAAGACGATGATCAAGTAGCGGAAGAACCACCGGTTATTGGATTTTGGAGCGGATTTGCATGGCTGGTCGGAATGACCCTTGTTATTGCTTTGTTGTCTGAATACGTAGTGGCTACAATTGAGGATGCATCAGATTCGTGGGGTTTATCAGTTAGCTTCCTAAGCATAATTTTACTACCAATTGTTGGAAATGCAGCCGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGATATATCATTAGGTGTTGCTCTAGGATCTGCGACTCAAATTGCTCTATTTGTGATTCCACTGTGCGTGATTGTTGGTTGGATAATGGGAATCAACATGGACCTTAATTTCAACCTCCTTGAAACTGGCTCTCTTGGCTTATCAATAGTTGCTACAGCATTCACTTTACAGGACGGCACTTCCCATTACATCAAAGGACTAGTTCTTCTTCTCTGCTACATTGTCATATCAGCTTGTTTCTTTGTATCCAACACACCTTTGAGTAAGTGCATTTAA 1233 42.98 MRPYGRTAHNMSSSSLRKKSDLTIVSKVRFGCLRKLLINLQEVILGTKLSVLFPAIPLAIAAEFYGFGRPWIFGLSLLGLTPLAERVSFLTEQIAYYTGSTVGGLLNATCGNATELIIAVLALSKRKIEVVKYSLLGSVLSNLLLVLGTSLFCGGLANLKKEQKFDRRQGDVNSLMLLLSLLCHLLPLLFTLAGASAAVTTFPTLALSRASSIIMLVAYIAYIVFQLWTHRQLFEAQDSEDDDQVAEEPPVIGFWSGFAWLVGMTLVIALLSEYVVATIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVGWIMGINMDLNFNLLETGSLGLSIVATAFTLQDGTSHYIKGLVLLLCYIVISACFFVSNTPLSKCI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62308527 62310780 - Bma002443.1 Bma01g01790 76307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01790 410 Gene3D - 246 401 IPR044880 -
Bma01g01790 410 Gene3D - 99 240 IPR044880 -
Bma01g01790 410 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 407 - -
Bma01g01790 410 TIGRFAM caca2: calcium/proton exchanger 36 400 - -
Bma01g01790 410 Pfam Sodium/calcium exchanger protein 257 397 IPR004837 GO:0016021|GO:0055085
Bma01g01790 410 Pfam Sodium/calcium exchanger protein 71 228 IPR004837 GO:0016021|GO:0055085
Bma01g01790 410 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 407 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bma01g01790 410 TIGRFAM cax: calcium/proton exchanger 54 400 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01790 Bma-Chr1:62308527 Bma12g00897 Bma-Chr12:40332592 1.70E-120 dispersed
Bma01g01790 Bma-Chr1:62308527 Bma02g01269 Bma-Chr2:54712794 1.72E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01790 K07300 - csv:101213857 636.721