Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01795 ATGTTGTGGGTTGACAAGTACCGTCCCAAAACCCTAGACCAGATCATGGTCCACCAAGACGTCGCTCAGAACCTCAAGAAATTGGTTACGGAGCAGGACTGCCCACATTTACTCTTCTATGGACCTCCCGGCTCAGGAAAGAAAACCCTAATCATGGCCTTAATTCGACAGATGTTCGGACCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACATGGAAAGTGGATGCTGGAAGTCGAAGTATTGATATAGAGTTGACAACATTATCTAGTGCAAACCATGTGGAATTAAATCCCAGTGATGCAGGTTTTCAAGACAGATACATTGTTCAAGAGATAATAAAGGAAATGGCAAAGAATAGACCAATTGACACAAAGGGAAGAAAAGGATATAAAGTGTTAGTTCTCAATGAAGTTGACAAACTCTCAAGAGAAGCGCAGCATTCTCTACGCAGAACAATGGAGAAGTATAGTTCTTATTGCAGGTTAATACTTTGCTGTAATAGTTCGTCAAGAGTTACGGAAGCCATTAGGTCTCGATGTCTTAATGTTCGGATTAATTCACCGACAGAAGATCAGATTGTTAAGGTGTTAGAGTTTGTGGGGAAGAAAGAAGGACTGCAGATTCCATCTGGATTTGCTGCTCGTATTGCTGAAAAATCAAATCGAAGTTTAAGGAGGGCTATATTGTCTTTAGAGACTTGTCGCGTGCAACAGTATCCTTTTAGTAGCAGTCAAGTCATACCACCAATGGATTGGGAGGAATATGTGGCCGAGATATCATCTGACATAATGAAGGAGCAGAGCCCTAAGAGATTGTTTGAGGTTCGAGGAAAGTTGTATGAGCTTCTCGGGAACTGTATTCCTGCAGAGATTATCTTAAAGAGATTACTATACGAACTACTCAAAAAATTGGATGCCGAATTAAAGCATGAGATCTGCCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGACAAAAAGCCATCTTTCACCTGGAAGCATTTGTGGCCAAATTCATGAGCATATACAAGACGTTCCTCATATCGACATTTGGGTGA 1065 41.6 MLWVDKYRPKTLDQIMVHQDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALIRQMFGPSAEKVKVENKTWKVDAGSRSIDIELTTLSSANHVELNPSDAGFQDRYIVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINSPTEDQIVKVLEFVGKKEGLQIPSGFAARIAEKSNRSLRRAILSLETCRVQQYPFSSSQVIPPMDWEEYVAEISSDIMKEQSPKRLFEVRGKLYELLGNCIPAEIILKRLLYELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKTFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62670901 62681294 - Bma002447.1 Bma01g01795 76312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01795 354 CDD AAA 19 181 - -
Bma01g01795 354 Gene3D - 252 345 - -
Bma01g01795 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Bma01g01795 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 241 IPR027417 -
Bma01g01795 354 SMART AAA_5 33 192 IPR003593 -
Bma01g01795 354 Gene3D - 1 189 IPR027417 -
Bma01g01795 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Bma01g01795 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Bma01g01795 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Bma01g01795 354 Gene3D - 190 250 - -
Bma01g01795 354 CDD HLD_clamp_RFC 189 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01795 Bma-Chr1:62670901 Bma06g01245 Bma-Chr6:49607656 1.55E-51 dispersed
Bma07g00220 Bma-Chr7:2616295 Bma01g01795 Bma-Chr1:62670901 1.05E-07 dispersed
Bma01g01795 Bma-Chr1:62670901 Bma01g02668 Bma-Chr1:84176956 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01795 K10756 - jre:109000861 639.417