Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01801 | GACAAGGAAAACTTGTGTCTTTACGGACACTCAAATGAAGCCTGGGAAGTAACTCTTCCTGCAGAGGAGGTTCCACCCGAGCTTCCTGAGCCAGTACTTGGAATAAATTTTGCGAGAGATGGGATGAATCGCAAAGACTGGATTTCGTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTTTCTATCTTGGAGCCCGTCTTAACATGGCCGAAAGGAAGCATCTTTTTAGCTTGATCAATGATTTGCCAACTGTCTTTGAAGTTGTGACTGAGAGAAATCCTATTAAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATTAAGCACAAAGAGTTCCTGGATGCTGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACACAAAGGCTGCAGAAGAAAATTATGAAGAAGACGAAGACGAACTCAACGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAATTCTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCATGGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA | 615 | 44.88 | DKENLCLYGHSNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLAVAFYLGARLNMAERKHLFSLINDLPTVFEVVTERNPIKENPSVDSGSKSRLSTKSSWMLQRSNDGQVKSNTKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCSMKKGRQ | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 63399518 | 63400945 | + | Bma002461.1 | Bma01g01801 | 76318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01801 | 204 | CDD | PHD_AL_plant | 150 | 200 | IPR044104 | - | |
Bma01g01801 | 204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 198 | IPR013083 | - | |
Bma01g01801 | 204 | SUPERFAMILY | FYVE/PHD zinc finger | 138 | 202 | IPR011011 | - | |
Bma01g01801 | 204 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 1 | 203 | - | - | |
Bma01g01801 | 204 | Pfam | PHD-finger | 151 | 199 | IPR019787 | - | |
Bma01g01801 | 204 | ProSitePatterns | Zinc finger PHD-type signature. | 151 | 197 | IPR019786 | - | |
Bma01g01801 | 204 | ProSiteProfiles | Zinc finger PHD-type profile. | 148 | 200 | IPR019787 | - | |
Bma01g01801 | 204 | Pfam | Alfin | 1 | 93 | IPR021998 | GO:0006355|GO:0042393 | |
Bma01g01801 | 204 | Coils | Coil | 129 | 149 | - | - | |
Bma01g01801 | 204 | PANTHER | CPG BINDING PROTEIN | 1 | 203 | IPR045104 | GO:0006355|GO:0042393 | |
Bma01g01801 | 204 | SMART | PHD_3 | 150 | 198 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01801 | Bma-Chr1:63399518 | Bma04g00716 | Bma-Chr4:7308242 | 4.06E-116 | dispersed | |
Bma01g01743 | Bma-Chr1:55957108 | Bma01g01801 | Bma-Chr1:63399518 | 1.05E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56742 | PF12165 | Alfin | 3.10E-48 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01801 | - | - | cit:102609983 | 347.436 |