Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01801 GACAAGGAAAACTTGTGTCTTTACGGACACTCAAATGAAGCCTGGGAAGTAACTCTTCCTGCAGAGGAGGTTCCACCCGAGCTTCCTGAGCCAGTACTTGGAATAAATTTTGCGAGAGATGGGATGAATCGCAAAGACTGGATTTCGTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTTTCTATCTTGGAGCCCGTCTTAACATGGCCGAAAGGAAGCATCTTTTTAGCTTGATCAATGATTTGCCAACTGTCTTTGAAGTTGTGACTGAGAGAAATCCTATTAAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATTAAGCACAAAGAGTTCCTGGATGCTGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACACAAAGGCTGCAGAAGAAAATTATGAAGAAGACGAAGACGAACTCAACGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAATTCTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCATGGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA 615 44.88 DKENLCLYGHSNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLAVAFYLGARLNMAERKHLFSLINDLPTVFEVVTERNPIKENPSVDSGSKSRLSTKSSWMLQRSNDGQVKSNTKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCSMKKGRQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63399518 63400945 + Bma002461.1 Bma01g01801 76318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01801 204 CDD PHD_AL_plant 150 200 IPR044104 -
Bma01g01801 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 198 IPR013083 -
Bma01g01801 204 SUPERFAMILY FYVE/PHD zinc finger 138 202 IPR011011 -
Bma01g01801 204 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 1 203 - -
Bma01g01801 204 Pfam PHD-finger 151 199 IPR019787 -
Bma01g01801 204 ProSitePatterns Zinc finger PHD-type signature. 151 197 IPR019786 -
Bma01g01801 204 ProSiteProfiles Zinc finger PHD-type profile. 148 200 IPR019787 -
Bma01g01801 204 Pfam Alfin 1 93 IPR021998 GO:0006355|GO:0042393
Bma01g01801 204 Coils Coil 129 149 - -
Bma01g01801 204 PANTHER CPG BINDING PROTEIN 1 203 IPR045104 GO:0006355|GO:0042393
Bma01g01801 204 SMART PHD_3 150 198 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01801 Bma-Chr1:63399518 Bma04g00716 Bma-Chr4:7308242 4.06E-116 dispersed
Bma01g01743 Bma-Chr1:55957108 Bma01g01801 Bma-Chr1:63399518 1.05E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56742 PF12165 Alfin 3.10E-48 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01801 - - cit:102609983 347.436