Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01801 GACAAGGAAAACTTGTGTCTTTACGGACACTCAAATGAAGCCTGGGAAGTAACTCTTCCTGCAGAGGAGGTTCCACCCGAGCTTCCTGAGCCAGTACTTGGAATAAATTTTGCGAGAGATGGGATGAATCGCAAAGACTGGATTTCGTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTTTCTATCTTGGAGCCCGTCTTAACATGGCCGAAAGGAAGCATCTTTTTAGCTTGATCAATGATTTGCCAACTGTCTTTGAAGTTGTGACTGAGAGAAATCCTATTAAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATTAAGCACAAAGAGTTCCTGGATGCTGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACACAAAGGCTGCAGAAGAAAATTATGAAGAAGACGAAGACGAACTCAACGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAATTCTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCATGGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA 615 44.88 DKENLCLYGHSNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLAVAFYLGARLNMAERKHLFSLINDLPTVFEVVTERNPIKENPSVDSGSKSRLSTKSSWMLQRSNDGQVKSNTKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCSMKKGRQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63399518 63400945 + Bma002461.1 Bma01g01801 76318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01801 204 CDD PHD_AL_plant 150 200 IPR044104 -
Bma01g01801 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 198 IPR013083 -
Bma01g01801 204 SUPERFAMILY FYVE/PHD zinc finger 138 202 IPR011011 -
Bma01g01801 204 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 1 203 - -
Bma01g01801 204 Pfam PHD-finger 151 199 IPR019787 -
Bma01g01801 204 ProSitePatterns Zinc finger PHD-type signature. 151 197 IPR019786 -
Bma01g01801 204 ProSiteProfiles Zinc finger PHD-type profile. 148 200 IPR019787 -
Bma01g01801 204 Pfam Alfin 1 93 IPR021998 GO:0006355|GO:0042393
Bma01g01801 204 Coils Coil 129 149 - -
Bma01g01801 204 PANTHER CPG BINDING PROTEIN 1 203 IPR045104 GO:0006355|GO:0042393
Bma01g01801 204 SMART PHD_3 150 198 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01801 - - - cit:102609983 347.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01801 Bma-Chr1:63399518 Bma04g00716 Bma-Chr4:7308242 4.06E-116 dispersed
Bma01g01743 Bma-Chr1:55957108 Bma01g01801 Bma-Chr1:63399518 1.05E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00038 . 1 236 Alfin-like Transcription Factor Family AT1G14510 83.9 3.4e-101 364.8
Bma02g00545 CCT,ECH 1 247 Alfin-like Transcription Factor Family AT1G14510 68.3 2.1e-95 345.5
Bma01g00252 CCT 1 220 Alfin-like Transcription Factor Family AT1G14510 69.8 7.9e-90 327.0
Bma06g00890 . 1 250 Alfin-like Transcription Factor Family AT1G14510 68.4 6.9e-86 313.9
Bma08g01024 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.0 1.6e-79 292.7
Bma01g02201 CCT,ECH 1 237 Alfin-like Transcription Factor Family AT1G14510 56.0 2.2e-76 282.3
Bma01g01743 . 7 236 Alfin-like Transcription Factor Family AT1G14510 57.1 7.1e-75 277.3
Bma05g00910 . 1 166 Alfin-like Transcription Factor Family AT1G14510 78.9 2.0e-64 242.7
Bma04g00716 . 4 221 Alfin-like Transcription Factor Family AT1G14510 56.6 1.5e-61 233.0
Bma01g01801 . 1 201 Alfin-like Transcription Factor Family AT1G14510 57.5 5.0e-60 228.0
Bma02g00545 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 2.5e-104 375.2
Bma06g00890 . 1 252 Alfin-like Transcription Factor Family AT5G26210 79.5 1.0e-100 363.2
Bma01g00252 CCT 1 222 Alfin-like Transcription Factor Family AT5G26210 73.6 2.0e-96 349.0
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G26210 61.8 2.0e-85 312.4
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.9 4.0e-81 298.1
Bma01g01743 . 4 238 Alfin-like Transcription Factor Family AT5G26210 58.6 2.0e-80 295.8
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G26210 70.0 5.4e-78 287.7
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT5G26210 55.1 1.7e-63 239.6
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT5G26210 57.8 3.7e-63 238.4
Bma11g00599 CCT 1 210 Alfin-like Transcription Factor Family AT5G26210 51.2 1.0e-60 230.3
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G26210 65.9 3.0e-52 202.2
Bma01g00252 CCT 3 222 Alfin-like Transcription Factor Family AT3G42790 76.0 2.0e-98 355.5
Bma02g00545 CCT,ECH 3 250 Alfin-like Transcription Factor Family AT3G42790 68.3 1.2e-95 346.3
Bma06g00890 . 3 252 Alfin-like Transcription Factor Family AT3G42790 78.0 6.2e-95 344.0
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 7.3e-80 293.9
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT3G42790 58.2 1.2e-79 293.1
Bma01g01743 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.4 7.6e-77 283.9
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT3G42790 67.5 4.9e-76 281.2
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT3G42790 52.9 2.6e-61 232.3
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT3G42790 55.1 3.4e-61 231.9
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G42790 61.3 3.9e-49 191.8
Bma08g01024 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.7 5.7e-114 407.1
Bma01g01743 . 4 239 Alfin-like Transcription Factor Family AT5G05610 74.3 1.6e-103 372.5
Bma02g00545 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 5.8e-90 327.4
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT5G05610 68.9 8.6e-86 313.5
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT5G05610 73.7 2.8e-84 308.5
Bma01g00252 CCT 4 222 Alfin-like Transcription Factor Family AT5G05610 60.0 3.1e-83 305.1
Bma06g00890 . 4 252 Alfin-like Transcription Factor Family AT5G05610 57.6 3.2e-80 295.0
Bma01g02201 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT5G05610 55.2 1.1e-72 270.0
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G05610 61.1 4.6e-71 264.6
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G05610 59.4 1.8e-46 183.0
Bma08g01024 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 2.0e-95 345.5
Bma01g01743 . 42 239 Alfin-like Transcription Factor Family AT3G11200 76.2 2.4e-85 312.0
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT3G11200 69.3 1.2e-84 309.7
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT3G11200 74.0 3.0e-83 305.1
Bma02g00545 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 8.9e-72 266.9
Bma01g00252 CCT 44 222 Alfin-like Transcription Factor Family AT3G11200 61.1 1.6e-68 256.1
Bma06g00890 . 44 252 Alfin-like Transcription Factor Family AT3G11200 60.3 1.2e-65 246.5
Bma12g00038 . 52 236 Alfin-like Transcription Factor Family AT3G11200 63.2 3.0e-59 225.3
Bma01g02201 CCT,ECH 44 240 Alfin-like Transcription Factor Family AT3G11200 53.5 2.1e-57 219.2
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G11200 57.7 6.4e-46 181.0
Bma11g00599 CCT 34 210 Alfin-like Transcription Factor Family AT3G11200 52.0 4.6e-44 174.9
Bma12g00038 . 1 169 Alfin-like Transcription Factor Family AT2G02470 82.2 7.2e-75 277.3
Bma01g00252 CCT 1 146 Alfin-like Transcription Factor Family AT2G02470 78.8 5.7e-64 241.1
Bma06g00890 . 1 155 Alfin-like Transcription Factor Family AT2G02470 74.8 1.1e-62 236.9
Bma02g00545 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 1.4e-62 236.5
Bma08g01024 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.8 3.2e-54 208.8
Bma01g02201 CCT,ECH 1 145 Alfin-like Transcription Factor Family AT2G02470 66.2 5.6e-51 198.0
Bma01g01743 . 7 154 Alfin-like Transcription Factor Family AT2G02470 63.6 8.1e-50 194.1
Bma04g00716 . 4 116 Alfin-like Transcription Factor Family AT2G02470 69.8 2.2e-39 159.5
Bma06g00890 . 3 153 Alfin-like Transcription Factor Family AT5G20510 79.5 5.8e-69 257.3
Bma02g00545 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 7.1e-67 250.4
Bma01g00252 CCT 3 139 Alfin-like Transcription Factor Family AT5G20510 81.0 3.0e-65 245.0
Bma12g00038 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 1.6e-63 239.2
Bma08g01024 . 7 172 Alfin-like Transcription Factor Family AT5G20510 59.5 1.3e-52 203.0
Bma01g01743 . 6 144 Alfin-like Transcription Factor Family AT5G20510 65.0 1.9e-51 199.1
Bma01g02201 CCT,ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 61.2 3.2e-51 198.4
Bma04g00716 . 4 131 Alfin-like Transcription Factor Family AT5G20510 59.0 5.3e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56742 PF12165 Alfin 3.10E-48 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01801 Bma_Chr01 FPKM 26.942772 28.835411 0.136454 0.0 1.145679 0.862459 1.256394 0.242913 0.178089 0.248713