Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01812 ATGGTTGCTGGTTGCTTTAGTATGTTGAATTGGTGCAGAGGAGGAAAAAGTGGTTTTGCTCAGCCTCAGTCGAGTGAAGAAGGCCCTATTACCAACAATGTGAGGGTGTTTTCTTATAGTTCTTTGCGATCAGCGACGGGTAACTTCCATCCATCAAGCAGAATAGGTGGAGGGGGTTATGGAACTGTTTATAGAGGAATTCTAGGAGATGGTACTCAAATTGCCATCAAATCTCTTTCTGCAAAATCTACGCAAGGAACACAGGAATTTTTTAATGAGGTTCACATGGTTTCGAAAATAAGACATCCTAATCTTGTTGAACTGATTGGCTGTTGCATTGAAGACAATCATCAAATATTGGTTTATGAATATCTAGAGAACAATAGTCTTTCAAGTAATTTGTTCGGTTCAAAGAGTAAACATCTAACTCTCCATTGGTCAACTAGAGCTTCTATTTGCCTGGGTGCAGCTTCTGGCCTTAGATTTCTTCATGAGGAAGCTGACCCGCAAATTGTTCATAGAGATATTAAGGCTAGCAACATTCTTCTTGATGCAAAATTTCATCCTAAAATAGGAGATTTTGGGCTAGCAAAACTGTTTCCTGACAATGTCACTCATATAAGTACTCGAGTGGCTGGAACTGTAGGCTATTTGGCTCCTGAGTATGCATCTTTCGGACAACTTACAAAGAAGGCGGACGTCTACAGTTTTGGGGTACTAATGCTGGAAATAATTAGTGGCAGCAGCAGCAGTAAAGTAGCATTTGGAGAGGATCTGCTGGTTCTTGTGGAATGGGCATGGAAGCTAGGAGAAGAAGAAAGACTACTCGAACTTGTCGATCAAGACCTAACCGATTATCCAGAAGCAGAGGTGATGCGTTTCATTAAAGTTGCTCTATTCTGCACACAAGCAGCTGCAAGCCAGAGGCCAAGCATGAAGCAGGTTGTGGAGATGCTCTCCAAGGATGTCCGTCTTAACGAGAAGATACTAACGAAGCCGGGAGTTTATAAAAAGGCACAAATTTCTACAGAGGAGGCCTCATCCTCCCATACACAGAAAAGTAAGCACTCTTCGTTCCAATTTAACAGTTCCTCCTCTCAAACTCAGTTGGTTCCAAGGTGA 1122 42.16 MVAGCFSMLNWCRGGKSGFAQPQSSEEGPITNNVRVFSYSSLRSATGNFHPSSRIGGGGYGTVYRGILGDGTQIAIKSLSAKSTQGTQEFFNEVHMVSKIRHPNLVELIGCCIEDNHQILVYEYLENNSLSSNLFGSKSKHLTLHWSTRASICLGAASGLRFLHEEADPQIVHRDIKASNILLDAKFHPKIGDFGLAKLFPDNVTHISTRVAGTVGYLAPEYASFGQLTKKADVYSFGVLMLEIISGSSSSKVAFGEDLLVLVEWAWKLGEEERLLELVDQDLTDYPEAEVMRFIKVALFCTQAAASQRPSMKQVVEMLSKDVRLNEKILTKPGVYKKAQISTEEASSSHTQKSKHSSFQFNSSSSQTQLVPR 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64243745 64246191 + Bma002486.1 Bma01g01812 76329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01812 373 Pfam Protein tyrosine and serine/threonine kinase 53 319 IPR001245 GO:0004672|GO:0006468
Bma01g01812 373 CDD STKc_IRAK 55 321 - -
Bma01g01812 373 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 357 - -
Bma01g01812 373 PIRSF ILK 8 332 - -
Bma01g01812 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Bma01g01812 373 Gene3D Phosphorylase Kinase; domain 1 19 124 - -
Bma01g01812 373 Gene3D Transferase(Phosphotransferase) domain 1 125 332 - -
Bma01g01812 373 SUPERFAMILY Protein kinase-like (PK-like) 28 319 IPR011009 -
Bma01g01812 373 MobiDBLite consensus disorder prediction 342 373 - -
Bma01g01812 373 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 357 - -
Bma01g01812 373 SMART serkin_6 49 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01812 373 ProSiteProfiles Protein kinase domain profile. 49 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01812 373 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01812 Bma10g00326 CCT
Bma01g01812 Bma10g00326 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01812 Bma-Chr1:64243745 Bma07g00370 Bma-Chr7:4624723 1.49E-140 dispersed
Bma01g01812 Bma-Chr1:64243745 Bma10g00326 Bma-Chr10:3002364 4.69E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66290 PF07714 PK_Tyr_Ser-Thr 2.10E-48 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01812 - - csv:101218048 510.76