Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01859 ATGAGGCCAATTTTGATGAAAGGGCACGAGAGGCCATTGACGTTCCTTAAGTATAATAGGGACGGAGACCTCTTATTCTCCTGTGCCAAAGATCACAACCCGACTGTTTGGTATGCTGACAATGGCGAGCGTTTGGGTACTTATCGTGGCCATAACGGTGCCGTCTGGTGCTGCGACGTCTCCAGGGATTCAATGCGTCTGATAACTGGAAGTGCAGATCAGACAGCCAAGGTGTGGAATGTTCAAACAGGCCAACAACTCTTCACGTTCATTTTTGGCTCACCAGCAAGAGCCGTCGACTTCTCTGTTGGCGACAAGCTTGCTGTGATTACTACTGATCCTTTCATGGAATTGCCTTCTGCTATTCATGTTAAACGAATTGCCCAAGACCCTGACGATCGTATACTGAGTGATTCTGTGCTAGTTATTAAGGGTCCTCAAGGAAGAATTAATAGAGCTATATGGGGACCCCTAAACAAAACAATAACAGGTAAAATTATTAAAGAATCTGATAAGGAGCTCGGGCACAAGAAAACAATTACTTCACTTTCAAAGTCAGCTGATGGTTCACATTTTCTCACTGGTTCATTGGATAAATCTGCGAAGTTGTGGGATGTCAGAACATTGACCCTAATCAAGACCTATGTGACGGAGCGCCCAGTTAACGCAGTTGCTATTTCACCACTGCTTGACCATGTTGTGATTGGTGGTGGACAGGATGCATCTGCTGTCACAACAACCGATCATCGTGCTGGAAAGTTTGAAGCCAAATTTTTCGACAAGATCCTTCAAGAGGAAATTGGAGGTGTAAAAGGGCATTTCGGACCTATAAATGCTTTAGCGTTTAATCCTGACGGTAAAAGTTTCTCTAGCGGAGGGGAAGATGGTTATGTTCGATTACATCATTTCGACGCTGATTACTTCAACATCAAATTATAG 939 44.09 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKVWNVQTGQQLFTFIFGSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIAQDPDDRILSDSVLVIKGPQGRINRAIWGPLNKTITGKIIKESDKELGHKKTITSLSKSADGSHFLTGSLDKSAKLWDVRTLTLIKTYVTERPVNAVAISPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDADYFNIKL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68151657 68154852 + Bma002573.1 Bma01g01859 76376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01859 312 CDD WD40 7 300 - -
Bma01g01859 312 SUPERFAMILY WD40 repeat-like 4 300 IPR036322 GO:0005515
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Bma01g01859 312 SMART WD40_4 163 205 IPR001680 GO:0005515
Bma01g01859 312 SMART WD40_4 1 38 IPR001680 GO:0005515
Bma01g01859 312 SMART WD40_4 263 302 IPR001680 GO:0005515
Bma01g01859 312 SMART WD40_4 208 247 IPR001680 GO:0005515
Bma01g01859 312 SMART WD40_4 41 80 IPR001680 GO:0005515
Bma01g01859 312 Gene3D - 1 312 IPR015943 GO:0005515
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Bma01g01859 312 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 312 IPR027525 GO:0003743|GO:0005737|GO:0005852
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 208 - -
Bma01g01859 312 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Bma01g01859 312 PRINTS G protein beta WD-40 repeat signature 25 39 IPR020472 -
Bma01g01859 312 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Bma01g01859 312 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 300 IPR001680 GO:0005515
Bma01g01859 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 311 - -
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Bma01g01859 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 311 - -
Bma01g01859 312 Pfam WD domain, G-beta repeat 175 205 IPR001680 GO:0005515
Bma01g01859 312 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Bma01g01859 312 Pfam WD domain, G-beta repeat 269 300 IPR001680 GO:0005515
Bma01g01859 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01859 Bma-Chr1:68151657 Bma14g00858 Bma-Chr14:9650232 0 dispersed
Bma01g01859 Bma-Chr1:68151657 Bma07g01069 Bma-Chr7:42958913 8.94E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01859 K03246 - csv:101211648 585.104