Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma01g01861 | ATGGAATTTGGGGACCTTCACAGGCAGGTTCAGAGGCCAAAATATGATTGTCTTCTGTTTGATCTGGATGATACTCTCTATCCCCTAAGCTCCGGCATGTCAACTGCTTGCCGAAAGAATATAGAAGATTATATGATGGAAAAGCTTGGCATCGAGAAGAGCAAAATCGCTGATATGGGCAATTTACTGTACAAGAACTATGGAACGACAATGGCTGGTTTGAGGGCCATTGGCTATGACTTTGACTACGACGAATATCACAGTTTCGTTCATGGGAGATTACCTTATGAAAACCTGAAGCCTGATCCTGTTTTGAGGAGTCTTCTTCTTGGTCTGCCTTTCAGAAAAATTATATTCACAAACGCTGACAAGAGTCACGCAGTTAAAGCACTTGGCAGACTTGGATTAGAGGACTGTTTCGAAGGGATCATCTGCTTTGAGACCCTCAATCCAGTTCATAAAACCAGTGTTTCCGATGATGAAGATGATGTTGTGTTTGCCAGGTCTGGTGTTGGTCTTCCCCGAAGCAGCAATGAAATATTTGACATTACTGCTCATTTCGCTCAACCCAATACAGAGAGAAACTTACCCAGAACACCCATTCTCTGTAAACCATCAGAAAAATCTATTAAAGAGGCTCTCAGAATTGCAGAGATTAACCCTCAAAGAACACTTTTCTTTGAGGATAGTATCCGCAACATACAAGCAGGGAAACGTCTCGGTCTCGATACGGTTCTGATCGGTACTTCCCAGAAAATCAAAGGCTCGGATTACGCGTTAGAAAGCATCCACAATCTTAGGGAAGCCATTCCAGAGCTATGGGAGCTTGAAATCAAAGCAGAAGTCGTATACTCGGGCAAAGTTGCAGTTGAGACATCTGTGACAGCATGA | 891 | 43.21 | MEFGDLHRQVQRPKYDCLLFDLDDTLYPLSSGMSTACRKNIEDYMMEKLGIEKSKIADMGNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRSLLLGLPFRKIIFTNADKSHAVKALGRLGLEDCFEGIICFETLNPVHKTSVSDDEDDVVFARSGVGLPRSSNEIFDITAHFAQPNTERNLPRTPILCKPSEKSIKEALRIAEINPQRTLFFEDSIRNIQAGKRLGLDTVLIGTSQKIKGSDYALESIHNLREAIPELWELEIKAEVVYSGKVAVETSVTA | 296 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 68203700 | 68205190 | + | Bma002575.1 | Bma01g01861 | 76378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma01g01861 | 296 | Gene3D | - | 81 | 274 | IPR023214 | - | |
| Bma01g01861 | 296 | SFLD | C1.5: HAD, Beta-PGM, Phosphatase Like | 11 | 276 | - | - | |
| Bma01g01861 | 296 | TIGRFAM | Pyr-5-nucltdase: pyrimidine 5'-nucleotidase | 16 | 246 | IPR010237 | - | |
| Bma01g01861 | 296 | SFLD | C1.5.3: 5'-Nucleotidase Like | 11 | 276 | IPR010237 | - | |
| Bma01g01861 | 296 | SUPERFAMILY | HAD-like | 13 | 274 | IPR036412 | - | |
| Bma01g01861 | 296 | PANTHER | HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN | 1 | 296 | - | - | |
| Bma01g01861 | 296 | TIGRFAM | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 200 | 247 | IPR006439 | - | |
| Bma01g01861 | 296 | PANTHER | HALOACID DEHALOGENASE-LIKE HYDROLASE | 1 | 296 | - | - | |
| Bma01g01861 | 296 | Pfam | Haloacid dehalogenase-like hydrolase | 204 | 246 | IPR041492 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma01g01861 | Bma10g00298 | CCT | |
| Bma01g01861 | Bma10g00298 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma04g00789 | Bma-Chr4:8937796 | Bma01g01861 | Bma-Chr1:68203700 | 2.41E-83 | transposed | |
| Bma01g01861 | Bma-Chr1:68203700 | Bma10g00298 | Bma-Chr10:2731295 | 5.08E-127 | wgd | |
| Bma01g01861 | Bma-Chr1:68203700 | Bma07g01546 | Bma-Chr7:50971041 | 8.05E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma01g01861 | K07025 | - | vvi:100232886 | 474.552 |