Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01865 ATGTTGCCTCTGTTCCGCTGGATTCCTCTGTTCAGCCCCAGCTTGTCCTCCTCCATAAGTACCCCCTCACCATCTTACTCACTACACAAATCTCTCTCTCTCTCTGAAATTCTGAATATGACCCATCTTCTACTCTGCTCTGTTTCTCTTGTGTTGCTACTGGCACTGGCCGATGCTAGAATCCCAGGACTTTACGCCGGCGGTCCTTGGGAGAGCGCACACGCTACCTTCTACGGTGGCAGCGACGCCTCCGGAACAATGGGCGGTGCTTGTGGGTATGGAAATCTGTATAGCCAAGGCTACGGAGTGAATACTGCCGCACTAAGCACCGTTCTGTTCAACAGCGGACTCAGTTGCGGTGCCTGCTTTGAGATAAAGTGCGCCGACACTCCTAAATGGTGCCACCCTGGCAACCCTTCCATCTTCATCACCGCTACCAATTTCTGCCCTCCAAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCGCATTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGAATTGTCCCTGTTGCCTTCCGCCGGGTCCCATGCAGAAAGGCAGGAGGAATCAGGTTTACGATCAACGGCTTCCGTTACTTCAACTTGGTTCTGATCAGCAACGTCGCGGGTGCAGGCGATATCGTGCGCCTCAGCGTGAAGGGTACAAACACGGGGTGGATGAGCATGAGCCGAAACTGGGGGCAAAACTGGCAATCCAACTCCCCCTTGGTGGGCCAGTCTCTTTCCTTTAGAGTGACGGGCAGTGACGGACGCAGGTCCACCTCATTGAACGTTGCACCTTCGCATTGGCAATTTGGCCAGACCTTCACCGGAAAAAATTTCCGCGTCTGA 891 54.88 MLPLFRWIPLFSPSLSSSISTPSPSYSLHKSLSLSEILNMTHLLLCSVSLVLLLALADARIPGLYAGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTVLFNSGLSCGACFEIKCADTPKWCHPGNPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKAGGIRFTINGFRYFNLVLISNVAGAGDIVRLSVKGTNTGWMSMSRNWGQNWQSNSPLVGQSLSFRVTGSDGRRSTSLNVAPSHWQFGQTFTGKNFRV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68418003 68419439 + Bma002585.1 Bma01g01865 76382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01865 296 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 212 291 IPR007117 -
Bma01g01865 296 Pfam Lytic transglycolase 105 191 IPR009009 -
Bma01g01865 296 SMART dpbb_1 105 192 IPR007112 -
Bma01g01865 296 Gene3D - 59 198 IPR036908 -
Bma01g01865 296 Gene3D - 202 294 IPR036749 -
Bma01g01865 296 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 88 202 IPR007112 -
Bma01g01865 296 SUPERFAMILY Barwin-like endoglucanases 69 220 IPR036908 -
Bma01g01865 296 PANTHER EXPANSIN-A15 41 295 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 248 269 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 277 293 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 127 138 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 160 177 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 100 114 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 141 151 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 177 190 IPR002963 GO:0009664
Bma01g01865 296 PRINTS Expansin signature 201 213 IPR002963 GO:0009664
Bma01g01865 296 SUPERFAMILY PHL pollen allergen 200 291 IPR036749 -
Bma01g01865 296 PANTHER EXPANSIN 41 295 - -
Bma01g01865 296 PRINTS Expansin/Lol pI family signature 69 84 IPR007118 GO:0005576
Bma01g01865 296 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Bma01g01865 296 PRINTS Expansin/Lol pI family signature 185 201 IPR007118 GO:0005576
Bma01g01865 296 PRINTS Expansin/Lol pI family signature 109 127 IPR007118 GO:0005576
Bma01g01865 296 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Bma01g01865 296 PRINTS Expansin/Lol pI family signature 277 291 IPR007118 GO:0005576
Bma01g01865 296 Pfam Expansin C-terminal domain 203 280 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01865 Bma04g00671 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01865 Bma-Chr1:68418003 Bma08g01113 Bma-Chr8:50094989 1.42E-150 dispersed
Bma14g01167 Bma-Chr14:16988918 Bma01g01865 Bma-Chr1:68418003 4.34E-49 dispersed
Bma01g01865 Bma-Chr1:68418003 Bma11g00114 Bma-Chr11:1110498 7.44E-164 wgd
Bma01g01865 Bma-Chr1:68418003 Bma04g00671 Bma-Chr4:6450942 3.95E-175 wgd
Bma01g01865 Bma-Chr1:68418003 Bma07g00098 Bma-Chr7:1745475 1.26E-164 wgd
Bma01g01865 Bma-Chr1:68418003 Bma08g01001 Bma-Chr8:49073113 1.52E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01865 - - jre:109006802 474.552