Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01875 ATGGTTTTTACCTCTATGCCAGCTTATCTAGACCCAGAAAAATGGCAACAACAGCCAACCTATCAATCTGTAAGCTGTACAGACCCCAATTCTCAGCTTCTTCCTCCACCTCCACCTCCACTTCCACCGTCACTCTCTTATGGTCGAGGCGGCCCAGGCTCGATAAGGCCAGGCTCCATGGTCGACCAAGCTCGAATAGCCAACATGCCGATGCCCGAGCCTGCACTAAAATGCCCACGCTGTGAATCTACCAACACAAAATTCTGCTACTTTAACAACTACAGCCTCACTCAGCCTCGCCATTTTTGCAAAACCTGTCGGAGGTACTGGACCAGAGGAGGCGCTCTACGAAATGTCCCCGTTGGTGGCGGTTTCCGGAGGAATAGACGCATCAAAAGCAGCTCAAAATCTCCGGTCACCTCCGACAACCAAGCTTCTGGTGCTTCAGGTTCTGCTACCTCTTCTTCTCTCCCTCCTCTCCGGTTTACGTCTCCCATGCGGCATCACCTCACTGAAATTCCAGGCGGAGAAATTGGATTGAGTTATAGTTCTTTTCCCACACCATTTAATCCTGCTCCACAGTTTCCTTTTTTATCTGCATTTGATCCCTTTTCAGCCTCTGGCTATGGCAGCCTGAACCGTCATAAGCAGTCGATTTCTGAGCTCAATCACTTTAATTCCGTGAAAATCGAAGACACGGGACGGGAGTTCGATGTGGGGAAGCAGTTGTTTGGAGGTTCGGGAATTGAGCAGTATTGGAATGTTGGTTCTTCTGCGTGGACAGATTTTTCTGGGTTTAGTTCTTCTGCCAATGCTACCAACCATTTTCTATAA 834 48.92 MVFTSMPAYLDPEKWQQQPTYQSVSCTDPNSQLLPPPPPPLPPSLSYGRGGPGSIRPGSMVDQARIANMPMPEPALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNRRIKSSSKSPVTSDNQASGASGSATSSSLPPLRFTSPMRHHLTEIPGGEIGLSYSSFPTPFNPAPQFPFLSAFDPFSASGYGSLNRHKQSISELNHFNSVKIEDTGREFDVGKQLFGGSGIEQYWNVGSSAWTDFSGFSSSANATNHFL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68859855 68860809 - Bma002601.1 Bma01g01875 76392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01875 277 MobiDBLite consensus disorder prediction 120 163 - -
Bma01g01875 277 MobiDBLite consensus disorder prediction 134 161 - -
Bma01g01875 277 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Bma01g01875 277 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Bma01g01875 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 165 IPR045174 GO:0003700|GO:0006355
Bma01g01875 277 MobiDBLite consensus disorder prediction 14 58 - -
Bma01g01875 277 MobiDBLite consensus disorder prediction 15 30 - -
Bma01g01875 277 MobiDBLite consensus disorder prediction 31 46 - -
Bma01g01875 277 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Bma01g01875 277 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 7 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01875 Bma-Chr1:68859855 Bma04g01399 Bma-Chr4:48605521 2.31E-69 dispersed
Bma14g02017 Bma-Chr14:43539877 Bma01g01875 Bma-Chr1:68859855 1.24E-32 dispersed
Bma01g01875 Bma-Chr1:68859855 Bma14g00500 Bma-Chr14:5623454 1.13E-38 wgd
Bma01g01875 Bma-Chr1:68859855 Bma03g00291 Bma-Chr3:2194811 8.71E-54 wgd
Bma01g01875 Bma-Chr1:68859855 Bma07g01538 Bma-Chr7:50903739 2.68E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56745 PF02701 zf-Dof 1.30E-31 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01875 - - tcc:18597775 254.218