Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01879 ATGGCTGGCAAGGGAGAAGGACCGGCCATCGGAATTGATCTCGGTACTACCTACTCTTGCGTTGGTGTTTGGCAACATGATCGCGTTGAGATCATTGCCAACGACCAGGGTAACAGGACGACGCCGTCCTACGTTGGTTTTACCGATTCCGAGCGTCTGATCGGCGATGCAGCCAAGAATCAGGTCGCCATGAATCCCATCAACACCGTCTTTGATGCTAAGAGGTTGATAGGTCGCAGATTTAGCGATGCCCCAGTCCAAAGTGACATTAAGTTGTGGCCATTCAAGGTCATTCCTGGTGCTGGTGACAAGCCCATGATCGTAGTCAACTACAAAGGTGAAGATAAGCAGTTTGCTGCTGAAGAGATCTCTTCTATGGTCCTCATTAAAATGCGTGAGATTGCAGAGGCCTACCTTGGTTCGACTATAAAGAATGCTGTTGTTACTGTCCCTGCTTACTTCAATGATTCTCAGCGTCAGGCTACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTCATGCGAATTATTAATGAGCCCACAGCTGCTGCTATTGCTTATGGTCTTGACAAGAAGGCCACAAGTGTGGGTGAGAAGAATGTTTTGATCTTCGACCTTGGTGGTGGTACTTTTGATGTATCTCTTCTCACCATTGAAGAGGGTATCTTTGAGGTTAAGGCTACTGCTGGTGACACCCATCTTGGTGGTGAAGATTTTGATAACAGAATGGTTAACCATTTCGTACAAGAGTTCAAGAGGAAGAACAAGAAGGACATTAGTGGCAACCCTAGAGCACTGAGGAGGCTGAGGACATCCTGTGAGAGAGCTAAGAGGACACTTTCTTCCACTGCTCAGACCACCATTGAAATTGACTCCTTGTACGAGGGAATTGATTTCTACTCCACCATTACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTTAGAAAGTGTATGGAACCTGTTGAGAAATGTTTGAGGGATGCAAAGATGGACAAAAGCTCGGTCCACGATGTTGTTCTTGTAGGTGGTTCTACCAGAATTCCCAAGGTGCAACAGCTTCTGCAGGATTTCTTCAATGGTAAGGAACTCTGCAAGAGCATCAATCCTGACGAAGCTGTGGCATATGGTGCAGCAGTTCAAGCTGCTATCTTGAGTGGTGAAGGTAATGAGAAGGTTCAGGATCTCCTTCTCTTGGACGTTACCCCACTCTCCCTCGGTTTGGAAACAGCTGGAGGTGTGATGACTGTTCTGATACCGAGGAACACAACTATTCCAACCAAGAAAGAACAAGTTTTCTCAACCTACTCTGATAACCAGCCTGGTGTGTTGATCCAAGTGTATGAAGGTGAGAGAACCAGGACCCGGGACAACAATTTGCTGGGTAAGTTCGAGTTGTCGGGCATTCCTCCTGCCCCCAGAGGTGTACCCCAAATCACAGTCTGCTTCGATATTGATGCTAATGGTATCTTGAACGTAGCTGCGGAGGACAAGACCACGGGTCAAAAGAACAAGATCACCATTACAAATGACAAGGGAAGACTTTCCAAGGATGAGATTGAAAAGATGGTACAGGAAGCCGAGAAGTACAAGTCAGAAGATGAAGAGCATAAGAAGAAGGTAGAATCAAAAAATGCGTTGGAGAACTACGCATACAACATGAGAAACACAGTGAAGGATGAGAAGATTGGCGCCAAGCTTTCCCCCGAGGATAAGAAGAAGATTGAAGATGCTATTGAGCAGGCCATCCAATGGCTGGACAGCAATCAACTTGCGGAGGCTGATGAGTTTGACGACAAGATGAAGGAATTGGAGAGCGTGTGCAACCCCATAATTGCGAAGATGTACCAGGGTGCGGGCGGTGACATGGGTGGTGGTATGGATGAAGGTGCCCCTGCCGGTGGAGGCAGTGCCGGGCCCAAGATTGAGGAAGTCGATTAA 1944 47.38 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAPVQSDIKLWPFKVIPGAGDKPMIVVNYKGEDKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVAAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVESKNALENYAYNMRNTVKDEKIGAKLSPEDKKKIEDAIEQAIQWLDSNQLAEADEFDDKMKELESVCNPIIAKMYQGAGGDMGGGMDEGAPAGGGSAGPKIEEVD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69104163 69106470 - Bma002609.1 Bma01g01879 76396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01879 647 Gene3D Actin; Chain A, domain 4 235 318 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 36 48 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 396 415 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 477 493 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 209 219 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 146 166 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 369 389 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 8 21 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 58 66 - -
Bma01g01879 647 PRINTS 70kDa heat shock protein signature 337 353 - -
Bma01g01879 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Bma01g01879 647 MobiDBLite consensus disorder prediction 622 647 - -
Bma01g01879 647 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Bma01g01879 647 Gene3D - 71 126 - -
Bma01g01879 647 Gene3D - 192 366 - -
Bma01g01879 647 Coils Coil 521 541 - -
Bma01g01879 647 Gene3D - 546 619 IPR029048 -
Bma01g01879 647 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Bma01g01879 647 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Bma01g01879 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Bma01g01879 647 Gene3D - 10 384 - -
Bma01g01879 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Bma01g01879 647 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Bma01g01879 647 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Bma01g01879 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
Bma01g01879 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Bma01g01879 647 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Bma01g01879 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01879 Bma10g00293 CCT
Bma01g01879 Bma10g00293 ECH
Bma01g01879 Bma04g00660 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01879 Bma-Chr1:69104163 Bma07g00731 Bma-Chr7:19203020 0 dispersed
Bma06g01631 Bma-Chr6:52422748 Bma01g01879 Bma-Chr1:69104163 6.51E-85 dispersed
Bma09g00399 Bma-Chr9:33660075 Bma01g01879 Bma-Chr1:69104163 5.20E-40 dispersed
Bma06g01034 Bma-Chr6:47156609 Bma01g01879 Bma-Chr1:69104163 0 transposed
Bma13g00506 Bma-Chr13:9709869 Bma01g01879 Bma-Chr1:69104163 0 transposed
Bma13g00698 Bma-Chr13:19664215 Bma01g01879 Bma-Chr1:69104163 1.03E-163 transposed
Bma01g00660 Bma-Chr1:6017630 Bma01g01879 Bma-Chr1:69104163 3.19E-60 transposed
Bma01g01879 Bma-Chr1:69104163 Bma10g00293 Bma-Chr10:2671676 0 wgd
Bma01g01879 Bma-Chr1:69104163 Bma03g00124 Bma-Chr3:948990 0 wgd
Bma01g01879 Bma-Chr1:69104163 Bma04g00660 Bma-Chr4:6354896 0 wgd
Bma01g01879 Bma-Chr1:69104163 Bma08g00994 Bma-Chr8:49032753 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01879 K03283 - rcu:8279580 1208.36