Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01881 ATGGCGGTTAATATAACAGCCATTAAAACCTCCTCTAATGGAGTTTGGCAAGGAGATAACCCCCTTGACTTTGCCTTTCCTCTGTTAATCGTGCAAACCACCTTAATCCTCCTCCTCTCCCGCTTCCTCGCTTTCGTTCTGAAACCACTTCGCCAACCTAAAGTGATCGCGGAGATAGTCGGCGGAATTCTGCTTGGACCATCGGCGTTTGGACGAAACACAGAGTATTTGCACAGAATATTTCCTTCATGGAGCGGTCCGATTCTGGAATCGGTTGCGAGTATCGGCCTCCTTTTCTTTCTCTTTCTCGTTGGCCTCGAGCTCGATTTAAACTCGATTCGCCGGAGCGGCAAAAGAGCTTTTGGCATAGCAGTCGCTGGAATTTCTCTCCCTTTTGTCTGCGGAATAGGCGTTGCCTTTGTTCTCCGCAGTACCGTCGAAGGAGCCGATAAAGTCGGCTACGGTCAGTTTCTCGTGTTCATGGGGGTGGCGCTGTCGATCACCGCCTTCCCTGTGCTAGCTCGTATATTAGCCGAGCTCAAACTCCTTACAACTCAGGTGGGTGAAACCGCCATGGCCGCCGCTGCTTTCAACGACGTAGCCGCCTGGATATTACTCGCCCTAGCCGTCGCTCTAGCCGGAAATAATGAGAGCGGGGAGCACAGGAGCCCCATAGTTTCCATCTGGGTCCTCCTTTCCGGCGTTGGTTTCGTCGCTTTCATGATGATCGTAATCCGCCCGGCGATGAAATGGGTATCCCGCAGGTGCTCCTCCGAGCACGATGCCGTCGACGAAGCCTACATCTGCCTAACCTTAGCCGGGGTTTTAGTCTCTGGTTTCATCACTGACTTGATTGGAATCCACTCTATTTTCGGAGCATTTGTATTCGGATTAACGATTCCGAAGGGTGGAGATTTTGCGGAGAGATTGATCGACAGGATCGAGGATTTCGTTTCCGGCTTGTTGCTTCCTCTTTATTTTGCATCGAGTGGGTTGAAAACGAACGTTGCTAAAATCAAAGGTGCGAAGTCATGGGGGCTGTTGGTTCTGGTTATATCGACGGCCTGCTCCGGAAAGATCATCGGAACGTTCATCGTGGCAATGATGTTCATGATTCCGGTGAGGGAATCTCTGACTCTTGGTGTACTCATGAATACTAAAGGATTGGTGGAGCTCATCGTCCTCAACATTGGGAGGGAAAAAAAGGTATTAAACGATGAAATCTTCGCCATACTAGTTCTCATGGCACTCTTCACAACCTTCATCACAACTCCGACGGTGATGGCCATTTACAAGCCAGCACGTCGGGTCTCCACCCGCACTTTCAGGAAACTAGGCGATCTATCATCAGCCGACGACGCCTCCGACGAGCTCAGAATCCTGGCTTGTGTTCACGGCCCAAGAAATGTAGCTTCACTCATCGCCCTCATTGAGTCGACTCGGAGCACCAAAAAATCCCTCCTCAAGCTCTTCGTCTTGCACCTGGTCGAACTCACGGAGCGATCGTCTTCCATTATACTGGTTCAACGAGTCCGCCGAAACGGCTTCCCCTTCTTCAACAGGTTTCGTCGAGGTGCGTGGCACGACCAAGTCGCGGCGGCGTTCCAAACCTACAGCCAACTCGGCCGAGTCATCGCACGACCCACCACTGCGATCTCACCGTTGTCCACAATGCACGAGGATATTTGCCACGTGGCAGAAGATAAACGGGTTACGATGATCATCCTGCCTTTCCACAAACAATGGAGGGAAGAAGGTGAGGAAGCGATGGAGAATTTGGGGCATGGCTGGAGAGGAGTCAATCAGAGGGTGATGAAGAATTCACCATGCTCAGTCGCCGTCCTCGTCGACCGTGGATTTGGGTACACCGGCGATCAAACTCCTGGGCCCATTCCCAGTGGGTCCCAAAAGATCTGTGTCTTGTTTTTCGGTGGGCCTGACGATCGTGAAGCCCTAGAGCTGGGTGGTCGGATGGCAGAGCATCCATCCGTTAACGTCACCGTTATTAGATTCATTAGAAAGGAAGAAAGCAACGCCGTTACTTTACGACCCGCACCGTCAAAGTCCAGAGAAAAGAGTTACGCCTTCTCCACAGCCAAAATGAACCGGGAGAAGGAAAAGGAGCTGGACGACGCGGCGGCGGCGGAGTTTCAAAGCAAATGGGAAGGGGCTGTAGAGTACACGGAGAAGGTGGCTAACAACATTGTGGAGGCGGTGTTGGCGATCGGAAGGGATGGTAGGTTTGATCTAATAGTGGTGGGGAAAGGGCGGTTCCCGTCGACAATGGTGGCTGAACTGGCAGAGTGCCAAGCCGAGCACGCAGAGTTGGGGCCAATCGGCGATTTATTAGCCTCCTCCCACCACGGCGTAAAGTCTTCGGTGGTGGTGATTCAGCAACACGACGTGGCTCATGCAGAGGAGATCCCTGTTTCAAAGATCGTGCAAAGTCAGAGCGACAAGTTGAAAAACGACGAGTCTTCTTCTAGTGCGAGGGAGATTTCTCAAGTATAA 2511 52.01 MAVNITAIKTSSNGVWQGDNPLDFAFPLLIVQTTLILLLSRFLAFVLKPLRQPKVIAEIVGGILLGPSAFGRNTEYLHRIFPSWSGPILESVASIGLLFFLFLVGLELDLNSIRRSGKRAFGIAVAGISLPFVCGIGVAFVLRSTVEGADKVGYGQFLVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNNESGEHRSPIVSIWVLLSGVGFVAFMMIVIRPAMKWVSRRCSSEHDAVDEAYICLTLAGVLVSGFITDLIGIHSIFGAFVFGLTIPKGGDFAERLIDRIEDFVSGLLLPLYFASSGLKTNVAKIKGAKSWGLLVLVISTACSGKIIGTFIVAMMFMIPVRESLTLGVLMNTKGLVELIVLNIGREKKVLNDEIFAILVLMALFTTFITTPTVMAIYKPARRVSTRTFRKLGDLSSADDASDELRILACVHGPRNVASLIALIESTRSTKKSLLKLFVLHLVELTERSSSIILVQRVRRNGFPFFNRFRRGAWHDQVAAAFQTYSQLGRVIARPTTAISPLSTMHEDICHVAEDKRVTMIILPFHKQWREEGEEAMENLGHGWRGVNQRVMKNSPCSVAVLVDRGFGYTGDQTPGPIPSGSQKICVLFFGGPDDREALELGGRMAEHPSVNVTVIRFIRKEESNAVTLRPAPSKSREKSYAFSTAKMNREKEKELDDAAAAEFQSKWEGAVEYTEKVANNIVEAVLAIGRDGRFDLIVVGKGRFPSTMVAELAECQAEHAELGPIGDLLASSHHGVKSSVVVIQQHDVAHAEEIPVSKIVQSQSDKLKNDESSSSAREISQV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69254349 69257218 + Bma002614.1 Bma01g01881 76398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01881 836 PANTHER CATION/H + ANTIPORTER 3 816 - -
Bma01g01881 836 PANTHER BNAC06G14930D PROTEIN 3 816 - -
Bma01g01881 836 MobiDBLite consensus disorder prediction 814 836 - -
Bma01g01881 836 Gene3D - 458 774 - -
Bma01g01881 836 Pfam Sodium/hydrogen exchanger family 35 427 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma01g01881 836 Gene3D - 28 439 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01881 - - - zju:107431117 1271.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01881 Bma-Chr1:69254349 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma01g01881 Bma-Chr1:69254349 Bma04g00738 Bma-Chr4:7730755 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01881 Bma_Chr01 FPKM 0.363444 0.504239 15.804545 15.23454 74.003548 66.661583 77.366684 30.300617 29.696556 33.798145