Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01921 ATGATCTTTATCCTCGTTTACTGCACTGCTGGAATCTCCGGCGGCCATATTAATCCTGCTGTCACTTTCGGCCTGTTTCTAGCTCGCAAGGTCTCGTTAATCCGAGCTCTTCTGTACATGGTAGCTCAGTGCTTGGGAGCAATTTGTGGGTGTGGGCTCGTGAAGGCGTTTCAGAATGCTTACTATGAAGAATACCACGGCGGAGCTAACATGCTCGCCGCTGGTTACAACAAAGGCACTGGATTAGCAGCTGAAATCATCGGAACTTTCGTTCTTGTCTATACAGTCTTCTCTGCAACAGACCCGAAGAGAAACGCCAGAGATTCTCACGTTCCGGTCTTGGCGCCACTCCCGATTGGATTTGCGGTGTTTATGGTTCACCTAGCTACCATTCCCATCACCGGCACTGGAATCAACCCAGCTCGAAGCTTTGGGGCTGCAGTGATTTATAATAAAGAAAAAGCCTGGGATGATCAATGGATATTCTGGGTCGGACCATTTATTGGAGCTGCCATTGCAGCAATCTATCACCAGTATATTCTGAGAGCAGGGGCAGTGAAAGCTTTGGGCTCTTTCAGAAGCTCATACTGA 591 48.56 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALLYMVAQCLGAICGCGLVKAFQNAYYEEYHGGANMLAAGYNKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAIYHQYILRAGAVKALGSFRSSY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70932899 70933635 - Bma002671.1 Bma01g01921 76438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01921 196 PANTHER AQUAPORIN PIP2-4-RELATED 1 195 - -
Bma01g01921 196 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01921 196 ProSitePatterns MIP family signature. 16 24 IPR022357 -
Bma01g01921 196 Gene3D Glycerol uptake facilitator protein. 1 196 IPR023271 -
Bma01g01921 196 SUPERFAMILY Aquaporin-like 2 182 IPR023271 -
Bma01g01921 196 TIGRFAM MIP: MIP family channel proteins 2 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01921 196 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 195 IPR034294 -
Bma01g01921 196 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01921 196 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01921 196 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01921 196 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01921 196 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01921 Bma-Chr1:70932899 Bma08g01152 Bma-Chr8:50551770 9.38E-116 dispersed
Bma06g00489 Bma-Chr6:22956743 Bma01g01921 Bma-Chr1:70932899 1.66E-26 dispersed
Bma01g01921 Bma-Chr1:70932899 Bma07g00147 Bma-Chr7:2120793 2.44E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01921 K09872 - csv:101215300 374.785