Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01923 ATGATTACTTTTATGGAAACGAAAGAGAAAACAAAGGAGGTCGATAGATGCTTAGATCCTCAGCTATGGCATGCCTGTGCCGGAGGAATGGTTCAAATGCCGCCTGTAGATGCCAAGGTCTTCTACTTTCCTCAGGGCCATGCAGAGCACGCCAGTGGGCCGGTAGATTTCCGGAATTCCCCTAGACTTCCACCCTTTATTGCCTGCAGAGTTTCTGCAGTTAAATTCTTGGCCGATCTGGAAACTGACGAAGTTTATTCGAAGATCAAATTGGTTCCTTTAAGCCGCAGTGAGCTTGATTTTGAGGAAGATAGAATCAGTGGGCTTAATGGGGCTGTAGTGCAGGACAAACCAGCCTCGTTTGCAAAGACCCTGACTCAGTCTGATGCCAACAATGGCGGGGGATTCTCCGTTCCAAGATACTGTGCTGAAACGATCTTTCCACGATTGGATTACAATGTGGATCCCCCGGTCCAAAACATTCTTGCTAAGGATGTTCATGGGGAGACTTGGAAATTCCGTCACATTTATAGAGGGACTCCTAGGAGACATCTCTTGACGACTGGTTGGAGTACCTTTGTGAATCATAAGAAGCTCGTAGCGGGCGATTCCATCGTGTTTTTAAGAGCGGAAAATGGAGATTTATGCGTCGGAATTCGAAGGGCAAAGAGAGGAATTGGAGGTGGACCCGAATCGTCATCTGGGTGGAATCCTTCGGGTGGATATGGAGGATATTCAGGGTATTTGAGAGACGAAGAAAGCAAATTACTGGGAAATGCAAATGGTTTGAGCTCGAATGGGAGTTCAATGACGGGTAATGGAAAGGTTAGGCCGGAATCTGTCATGGAGACTGCCATACTTGCTGCTAATGGACATACATTCGAAGTCGTTTATTACCCTAGAGCTAGCACACCTGAATTTTGTGTGAGGGCTTCTTCGATGAGAGCGGCAATGCAGATCCGATGGTGCTCTGGAATGAGGTTCAAAATGGCGTTTGAAACTGAGGATTCGTCGAGAATAAGCTGGTTCTTGGGGACTATTTCTTCTGTCCAAGTTGCCGATCCAGTGCACTGGCCAGAATCTCCTTGGCGCATTCTCCAGGTTACATGGGATGAGCCAGATTTGCTGCAAAATGTGAAACGGGTTAGCCCGTGGCTTGTAGAGGTGGTATCGAATATGTCGGCGATCAATATCTCCCCATTCTCGCCTCCGAGAAAAAAGCCGAGATTGCCAAATCACTCTGAATTCCCTTTTGATGCCACCCTTTTCCCGATGCCAAATGCATTTGCCACTAACAACCACATTCGGCCGAGCAGCCCCTTCAGTTGTCTACCCGACTACTCCCCCCCTGCTGGCATGCAGGGAGCCAGGCATCCTAGTTACAATCAATCCTTCTCGGATCTCCAATTCAACACACTTCACTGCAGCCAATTCCCGGTTGGCCATGTACCACTCAATACCACATCCGCTCTTATGGGAGTGGTCCCGACTCTTGCAACGGTTCAAAAGGGTGTCATGGGAAATGGTCTCTCAAGCTTGTTGACAATGGCAGTTTCGAAAAAATCAGACGATTCAAAACCACCCCAGCTCATGCTTTTTGGCCAAACAATACTGACCGAGCAGCAAATGTCTCAGAGCTCCGGTGAAACCATCTCGCCAGGTCCCACCGGCAACAGTTCATCAGATGGGAACGGTGATAAAGCAGCGAATTTGTCCGATGAGTCAGGGCCGACCCTTTTCAACATTGAAACAGGTCATTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGAACAATTGACCTCTCTTTGCTCGGTTCCTATGAAGAACTTTGCAAAAAATTGGCAGATTTGTTCGGGATAGAAAATTCAGAGATGTTAAACCATGTGCTCTATAGGGACGGTTCTGGTGCACTCAAACACATAGGAGATGAGCCATTCAGTGAGTTCATGAAAACTGCAAGGCGGGTGACGATTTTAATGGAATCGGCAAGTGAATAA 2001 47.43 MITFMETKEKTKEVDRCLDPQLWHACAGGMVQMPPVDAKVFYFPQGHAEHASGPVDFRNSPRLPPFIACRVSAVKFLADLETDEVYSKIKLVPLSRSELDFEEDRISGLNGAVVQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNVDPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPESSSGWNPSGGYGGYSGYLRDEESKLLGNANGLSSNGSSMTGNGKVRPESVMETAILAANGHTFEVVYYPRASTPEFCVRASSMRAAMQIRWCSGMRFKMAFETEDSSRISWFLGTISSVQVADPVHWPESPWRILQVTWDEPDLLQNVKRVSPWLVEVVSNMSAINISPFSPPRKKPRLPNHSEFPFDATLFPMPNAFATNNHIRPSSPFSCLPDYSPPAGMQGARHPSYNQSFSDLQFNTLHCSQFPVGHVPLNTTSALMGVVPTLATVQKGVMGNGLSSLLTMAVSKKSDDSKPPQLMLFGQTILTEQQMSQSSGETISPGPTGNSSSDGNGDKAANLSDESGPTLFNIETGHCKVFMESEDVGRTIDLSLLGSYEELCKKLADLFGIENSEMLNHVLYRDGSGALKHIGDEPFSEFMKTARRVTILMESASE 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71019323 71021696 - Bma002673.2 Bma01g01923 76440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01923 666 Gene3D - 119 223 IPR015300 -
Bma01g01923 666 MobiDBLite consensus disorder prediction 542 568 - -
Bma01g01923 666 CDD B3_DNA 120 221 IPR003340 GO:0003677
Bma01g01923 666 Gene3D - 581 666 - -
Bma01g01923 666 MobiDBLite consensus disorder prediction 542 576 - -
Bma01g01923 666 Pfam Auxin response factor 287 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma01g01923 666 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Bma01g01923 666 SMART B3_2 121 223 IPR003340 GO:0003677
Bma01g01923 666 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Bma01g01923 666 PANTHER AUXIN RESPONSE FACTOR 6 661 - -
Bma01g01923 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma01g01923 666 Gene3D - 321 396 - -
Bma01g01923 666 SUPERFAMILY DNA-binding pseudobarrel domain 115 224 IPR015300 -
Bma01g01923 666 ProSiteProfiles PB1 domain profile. 584 664 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01923 Bma04g00608 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01923 Bma-Chr1:71019323 Bma08g01153 Bma-Chr8:50555010 0 dispersed
Bma10g01134 Bma-Chr10:38033255 Bma01g01923 Bma-Chr1:71019323 1.37E-31 dispersed
Bma01g01923 Bma-Chr1:71019323 Bma11g00175 Bma-Chr11:1567754 0 wgd
Bma01g01923 Bma-Chr1:71019323 Bma03g00079 Bma-Chr3:618630 1.70E-176 wgd
Bma01g01923 Bma-Chr1:71019323 Bma04g00608 Bma-Chr4:5796813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56746 PF02362 B3 1.00E-20 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01923 - - fve:101313821 943.725