Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01939 ATGGACAGAGAGTGGGGATCGAAGCCGGGAAGTGGCGGCGCTGCATCGGCGCAGAATGAAGCAATTGACCGTAGGGAGCGGCTCAGGAGACTAGCTCTCGAGACCATCGATCTCGCAAAAGATCCCTATTTTATGCGCAACCATCTCGGGAGTTATGAGTGTAAACTTTGTTTGACTCTTCACAACAATGAGGGAAATTATTTGGCGCACACACAAGGGAAGCGACATCAAACTAATTTGGCTAAACGAGCGGCTCGTGAAGCCAAAGATGCTCCTGCTCAGCCTCAGCCTCACAAACGCAAAGTGTCTATTCGAAAAACTGTTAAAATTGGTAGGCCCGGGTACAGGGTTACAAAGCAATTTGATCCTGAAACAAAGCAGAGATCTTTGCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTGGCAAAGCCAAGACATAGATTTATGTCCTCGTATGAGCAGAGAGTTCAACCTTTTGATAAAAGATATCAGTACCTTTTGGTTGCAGCTGAGCCGTATGAAATCATTGCTTTCAAGGTTCCAAGCACAGAAATAGACAAATCAACGCCAAAATTTTTCTCAAATTGGGATCCAGACTCGAAAATGTTCACGTTGCAATTATACTTCAAAATCAAGCCACCTGAACCGATCAAGACTCAAAGTGCTCCTGCACCCAACGGCACAGCAGCTCCTGGAGCTCCTCCAAGGCCTTTGCTCCCACCCCCACCACCACCCCAGGGTCTACCACCTGGTGCACTGCCACCATCAATACCTCCTCCTAACTTGGCCAATGGCCCTCGGCCAATGCCTCCTACTGGAACTCCACCTCTCCCTCCTCCACCACCTACCATGGGAAATTTCAATCCTCCAATGCCTCCACATGGTTTTCCCGCCCCACCGACACAGGGGCAAGCTGTTCGGCCGCCGCCACCTCCTCCAAATATGGGACAAGCACCAGGACCGCCTCCATTTCAGTGA 981 49.44 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSIRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLVAAEPYEIIAFKVPSTEIDKSTPKFFSNWDPDSKMFTLQLYFKIKPPEPIKTQSAPAPNGTAAPGAPPRPLLPPPPPPQGLPPGALPPSIPPPNLANGPRPMPPTGTPPLPPPPPTMGNFNPPMPPHGFPAPPTQGQAVRPPPPPPNMGQAPGPPPFQ 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71542278 71544574 - Bma002694.1 Bma01g01939 76456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01939 326 MobiDBLite consensus disorder prediction 229 326 - -
Bma01g01939 326 MobiDBLite consensus disorder prediction 216 326 - -
Bma01g01939 326 Pfam Zinc-finger of C2H2 type 52 76 - -
Bma01g01939 326 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Bma01g01939 326 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g01939 326 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Bma01g01939 326 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bma01g01939 326 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 312 - -
Bma01g01939 326 Gene3D - 93 216 - -
Bma01g01939 326 Gene3D Classic Zinc Finger 46 89 - -
Bma01g01939 326 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Bma01g01939 326 SMART CactinC_cactus_3 89 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01939 Bma-Chr1:71542278 Bma04g00582 Bma-Chr4:5574587 1.62E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01939 K12826 - pvy:116139341 421.779