Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01942 ATGCCTTTCCGCAGTTTCGCTTTAGGTACGCAGCAGGAGTTCGTCCGACCGGAGCTATGGAAGTGCGGCGTGGCGGAGTTTATCTCCACGTTGATCTTCGTCTTCGCCGGCCAGGGATCGGGAATGGCGTTTGCCAAGATAACGAGTAATGGCGCAACCACTGAAGCCTCAATAATCGCCGCCTCTCTCGCCCACGGTTTCGGTCTCTTCATTGGTGTCGCCGTCAGCTTTAACATCTCCGGGGGGCATGTTAATCCTGCAGTCACCTTTGGTGCATTCGTTGGCGGAAACGTTTCTCTCCTCCGCCTCATTGTTTACTGGATCGGTCAGCTTCTCGGCTCTGTCGCTGCATGTGGTCTTCTTAAATTCACCACCCACGGCATGGTTACGACACCCTTTTTGTTCTCCTCTGATATTACAGTCTGGAACGCATTCGTTTTCGAGATCGTCATGACTTTCGGTCTGGTCTATACGGTCTATGCCACAGCAATTGATCCAAACAAAGGAACTTTAAAGACAATTGCGCCTATCGCTATCGGCTTAGTCGTTGGCGCTAATGTTCTGGCCGGTGGAGTCTTCGAGGGGGCGTCGATGAACCCGGCCGTCTCATTTGGACCCGCTTTGGTAAGCTGGAGCTGGGACCACCAATGGGTCTACTGGGCCGGACCCCTCATCGGCGGCGGCATCGCCGGCCTTGTTTTCGAGGGTTTTTTCATCAAGCAGACCCACGATCCTCTCCCTCAGGAATTCTGA 753 53.92 MPFRSFALGTQQEFVRPELWKCGVAEFISTLIFVFAGQGSGMAFAKITSNGATTEASIIAASLAHGFGLFIGVAVSFNISGGHVNPAVTFGAFVGGNVSLLRLIVYWIGQLLGSVAACGLLKFTTHGMVTTPFLFSSDITVWNAFVFEIVMTFGLVYTVYATAIDPNKGTLKTIAPIAIGLVVGANVLAGGVFEGASMNPAVSFGPALVSWSWDHQWVYWAGPLIGGGIAGLVFEGFFIKQTHDPLPQEF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71826589 71827498 + Bma002701.1 Bma01g01942 76459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01942 250 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Bma01g01942 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Bma01g01942 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 CDD MIP 24 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma01g01942 250 Gene3D Glycerol uptake facilitator protein. 4 248 IPR023271 -
Bma01g01942 250 PANTHER AQUAPORIN TIP1-1 1 248 - -
Bma01g01942 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01942 Bma10g00237 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01942 Bma-Chr1:71826589 Bma10g00051 Bma-Chr10:539004 1.03E-119 dispersed
Bma07g01058 Bma-Chr7:42617601 Bma01g01942 Bma-Chr1:71826589 7.71E-21 transposed
Bma01g01942 Bma-Chr1:71826589 Bma04g00584 Bma-Chr4:5587666 1.97E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01942 K09873 - pvy:116107287 355.525