Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01951 ATGGCAGAAGAGCACCGATGCGAAGCGACCGAAGGCCACTGCCTCTGCGCGAACAACTGTGGCTTCTTCGGCAGCCCAGCAACGATGGGCCTTTGCTCCAAATGTTACAGAGACTACCGTCTGAAAGAGCAACAAGAAGCCTCCACCAAATCCACCATCGAAGCTGCTTTCTCATCCTCCAGATCGTCTCCTTCCTCCTCGCCGATCAAACCACTCTCCGATACATCTGCTCCTCCTCCCCTAGCCCTCCCCGAGATAGCCGAAGACTTGAGGATCCCATCGGTGATGGCAGACGTTCCGGAGGAGGCGAGCCGGCCGAACCGGTGCACGGTTTGCCGAAAAAGAGTCGGGTTCACCGGATTCCGATGCAAATGTGGGACCACATATTGTGGGGTCCACAGATATCCGGAGAAGCACGGCTGTACGTTCGATTTCAAGAAAGTGGGGAAGGAGGAGATAGCCCGTGCCAATCCTCTCGTGAAAGCCGATAAGTTGATGAGGATTTGA 507 55.42 MAEEHRCEATEGHCLCANNCGFFGSPATMGLCSKCYRDYRLKEQQEASTKSTIEAAFSSSRSSPSSSPIKPLSDTSAPPPLALPEIAEDLRIPSVMADVPEEASRPNRCTVCRKRVGFTGFRCKCGTTYCGVHRYPEKHGCTFDFKKVGKEEIARANPLVKADKLMRI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72061073 72061579 - Bma002714.1 Bma01g01951 76468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01951 168 SUPERFAMILY AN1-like Zinc finger 96 163 IPR035896 -
Bma01g01951 168 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 168 - -
Bma01g01951 168 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Bma01g01951 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Bma01g01951 168 MobiDBLite consensus disorder prediction 50 72 - -
Bma01g01951 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 168 - -
Bma01g01951 168 Pfam A20-like zinc finger 15 37 IPR002653 GO:0003677|GO:0008270
Bma01g01951 168 Gene3D - 87 164 IPR035896 -
Bma01g01951 168 Pfam AN1-like Zinc finger 109 145 IPR000058 GO:0008270
Bma01g01951 168 MobiDBLite consensus disorder prediction 50 81 - -
Bma01g01951 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Bma01g01951 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Bma01g01951 168 Gene3D - 1 69 - -
Bma01g01951 168 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01951 Bma-Chr1:72061073 Bma14g00831 Bma-Chr14:9272155 3.04E-45 dispersed
Bma09g00853 Bma-Chr9:47541479 Bma01g01951 Bma-Chr1:72061073 1.12E-07 dispersed
Bma07g01620 Bma-Chr7:51748742 Bma01g01951 Bma-Chr1:72061073 3.07E-46 transposed
Bma12g00118 Bma-Chr12:1778560 Bma01g01951 Bma-Chr1:72061073 1.88E-28 transposed
Bma01g01951 Bma-Chr1:72061073 Bma11g00222 Bma-Chr11:1989441 5.75E-50 wgd
Bma01g01951 Bma-Chr1:72061073 Bma07g00191 Bma-Chr7:2413910 4.51E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01951 - - csv:101211758 238.424