Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01960 | ATGGAGGAGAAGGACAGCCCATTTTCTGGGTCTCCCGGAGTATCGGAAACCGAGTCGACCCCTGCGCTAATGACTGAGATGGCGCCAAAAGTGGTCTCTATGGATGGGGAGAAAAGCTTTCTACCTTCGACTACGACTAAATCGACGATGGTGACGAGGGGAGGAGGAGGGTCGGTGAGTGGCGATTTTCTCGGGAAAAAGAAGAGGGGAAGGCCGAGAAAATATGATTCGGATGGGAACTTGAGCTTGGCTTACCAGAAAATTGCTTCGCCAGATGGGTTTTCTCTGTCACACACTTCACCTTCTGAGTTTTCTTCCCAAAAAGGGCGAGGTAGGCCTTCTGGGTCTAGAAATTGGCAACTTCTTTCTTCATTAGGTGAATTGTTTGCTAATACTGCTGGAGGAGACTTTACGCCTCATATTGTCACTGTGAAAACAGGGGAGGATGTTGCAGGGAAAATTCTTTCATTTTCACAGAAAGGGCCGAGAATGATTTGCGTTCTGTCAGCAAATGGGGCTGTCTCTAATGTTACTATTCACCAACCAGGCTCTTCTGGTGTCATTTTGACATACGAGGGTAGATTTGAGATTCTGTCCTTATCTGGGTCGTTCACAGTAACAGACAGTGGTGGTACGAGGAGTAGGACAGGCGGATTGAGCGTCTCCTTGGCAGGTCCAGACGGTCGAGTCATCGGTGGTGGTATCGCTGGTTTATTAGTGGCTGCCAGCCCCATCCAAATTGTCATCGGAAGTTTCATGCCGAACAAGTTCAAGATGCATAAAAGGAAGTACCGGAGAGAGTATGCAGTCTCTTCCACAAACAGAGCTGCACCAGAGACCAGGCCAATCCCACAAGACAACCCTGAGAACGAAATTCGCTCCGCTCCGTTGACAGGGCAAACGAACGGGGAAGTAGATGGGTGCGAAAGTGAGAAGCACAATCTCAATTTTCCGTCCGAGAATACTGCATGGACTATCTCAGCTTCTTCATCGGATCAAAGGATATCTCCTGATATTAACATTTCTGTGTCATTTGGAGAGTAG | 1044 | 48.28 | MEEKDSPFSGSPGVSETESTPALMTEMAPKVVSMDGEKSFLPSTTTKSTMVTRGGGGSVSGDFLGKKKRGRPRKYDSDGNLSLAYQKIASPDGFSLSHTSPSEFSSQKGRGRPSGSRNWQLLSSLGELFANTAGGDFTPHIVTVKTGEDVAGKILSFSQKGPRMICVLSANGAVSNVTIHQPGSSGVILTYEGRFEILSLSGSFTVTDSGGTRSRTGGLSVSLAGPDGRVIGGGIAGLLVAASPIQIVIGSFMPNKFKMHKRKYRREYAVSSTNRAAPETRPIPQDNPENEIRSAPLTGQTNGEVDGCESEKHNLNFPSENTAWTISASSSDQRISPDINISVSFGE | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 72759606 | 72761519 | + | Bma002732.1 | Bma01g01960 | 76477 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01960 | 347 | Gene3D | - | 139 | 273 | - | - | |
Bma01g01960 | 347 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 139 | 252 | IPR005175 | - | |
Bma01g01960 | 347 | MobiDBLite | consensus disorder prediction | 38 | 55 | - | - | |
Bma01g01960 | 347 | Pfam | AT hook motif | 66 | 77 | IPR017956 | GO:0003677 | |
Bma01g01960 | 347 | Pfam | AT hook motif | 108 | 117 | IPR017956 | GO:0003677 | |
Bma01g01960 | 347 | MobiDBLite | consensus disorder prediction | 291 | 305 | - | - | |
Bma01g01960 | 347 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 136 | 258 | - | - | |
Bma01g01960 | 347 | MobiDBLite | consensus disorder prediction | 269 | 319 | - | - | |
Bma01g01960 | 347 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 8 | 344 | IPR039605 | GO:0003680 | |
Bma01g01960 | 347 | CDD | DUF296 | 138 | 252 | IPR005175 | - | |
Bma01g01960 | 347 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Bma01g01960 | 347 | ProSiteProfiles | PPC domain profile profile. | 134 | 276 | IPR005175 | - | |
Bma01g01960 | 347 | SMART | AT_hook_2 | 107 | 119 | IPR017956 | GO:0003677 | |
Bma01g01960 | 347 | SMART | AT_hook_2 | 66 | 78 | IPR017956 | GO:0003677 | |
Bma01g01960 | 347 | PANTHER | AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN | 8 | 344 | - | - | |
Bma01g01960 | 347 | MobiDBLite | consensus disorder prediction | 92 | 117 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01960 | Bma-Chr1:72759606 | Bma04g00567 | Bma-Chr4:5132139 | 0 | dispersed | |
Bma01g01960 | Bma-Chr1:72759606 | Bma01g01969 | Bma-Chr1:73398310 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01960 | - | - | tcc:18598144 | 371.703 |