Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01960 ATGGAGGAGAAGGACAGCCCATTTTCTGGGTCTCCCGGAGTATCGGAAACCGAGTCGACCCCTGCGCTAATGACTGAGATGGCGCCAAAAGTGGTCTCTATGGATGGGGAGAAAAGCTTTCTACCTTCGACTACGACTAAATCGACGATGGTGACGAGGGGAGGAGGAGGGTCGGTGAGTGGCGATTTTCTCGGGAAAAAGAAGAGGGGAAGGCCGAGAAAATATGATTCGGATGGGAACTTGAGCTTGGCTTACCAGAAAATTGCTTCGCCAGATGGGTTTTCTCTGTCACACACTTCACCTTCTGAGTTTTCTTCCCAAAAAGGGCGAGGTAGGCCTTCTGGGTCTAGAAATTGGCAACTTCTTTCTTCATTAGGTGAATTGTTTGCTAATACTGCTGGAGGAGACTTTACGCCTCATATTGTCACTGTGAAAACAGGGGAGGATGTTGCAGGGAAAATTCTTTCATTTTCACAGAAAGGGCCGAGAATGATTTGCGTTCTGTCAGCAAATGGGGCTGTCTCTAATGTTACTATTCACCAACCAGGCTCTTCTGGTGTCATTTTGACATACGAGGGTAGATTTGAGATTCTGTCCTTATCTGGGTCGTTCACAGTAACAGACAGTGGTGGTACGAGGAGTAGGACAGGCGGATTGAGCGTCTCCTTGGCAGGTCCAGACGGTCGAGTCATCGGTGGTGGTATCGCTGGTTTATTAGTGGCTGCCAGCCCCATCCAAATTGTCATCGGAAGTTTCATGCCGAACAAGTTCAAGATGCATAAAAGGAAGTACCGGAGAGAGTATGCAGTCTCTTCCACAAACAGAGCTGCACCAGAGACCAGGCCAATCCCACAAGACAACCCTGAGAACGAAATTCGCTCCGCTCCGTTGACAGGGCAAACGAACGGGGAAGTAGATGGGTGCGAAAGTGAGAAGCACAATCTCAATTTTCCGTCCGAGAATACTGCATGGACTATCTCAGCTTCTTCATCGGATCAAAGGATATCTCCTGATATTAACATTTCTGTGTCATTTGGAGAGTAG 1044 48.28 MEEKDSPFSGSPGVSETESTPALMTEMAPKVVSMDGEKSFLPSTTTKSTMVTRGGGGSVSGDFLGKKKRGRPRKYDSDGNLSLAYQKIASPDGFSLSHTSPSEFSSQKGRGRPSGSRNWQLLSSLGELFANTAGGDFTPHIVTVKTGEDVAGKILSFSQKGPRMICVLSANGAVSNVTIHQPGSSGVILTYEGRFEILSLSGSFTVTDSGGTRSRTGGLSVSLAGPDGRVIGGGIAGLLVAASPIQIVIGSFMPNKFKMHKRKYRREYAVSSTNRAAPETRPIPQDNPENEIRSAPLTGQTNGEVDGCESEKHNLNFPSENTAWTISASSSDQRISPDINISVSFGE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72759606 72761519 + Bma002732.1 Bma01g01960 76477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01960 347 Gene3D - 139 273 - -
Bma01g01960 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Bma01g01960 347 MobiDBLite consensus disorder prediction 38 55 - -
Bma01g01960 347 Pfam AT hook motif 66 77 IPR017956 GO:0003677
Bma01g01960 347 Pfam AT hook motif 108 117 IPR017956 GO:0003677
Bma01g01960 347 MobiDBLite consensus disorder prediction 291 305 - -
Bma01g01960 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 258 - -
Bma01g01960 347 MobiDBLite consensus disorder prediction 269 319 - -
Bma01g01960 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 344 IPR039605 GO:0003680
Bma01g01960 347 CDD DUF296 138 252 IPR005175 -
Bma01g01960 347 MobiDBLite consensus disorder prediction 1 78 - -
Bma01g01960 347 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Bma01g01960 347 SMART AT_hook_2 107 119 IPR017956 GO:0003677
Bma01g01960 347 SMART AT_hook_2 66 78 IPR017956 GO:0003677
Bma01g01960 347 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 8 344 - -
Bma01g01960 347 MobiDBLite consensus disorder prediction 92 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01960 Bma-Chr1:72759606 Bma04g00567 Bma-Chr4:5132139 0 dispersed
Bma01g01960 Bma-Chr1:72759606 Bma01g01969 Bma-Chr1:73398310 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01960 - - tcc:18598144 371.703