Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01961 ATGGATGATCCCTGCGGCCTCTCCGACCTTAGACAGCTAGTAAGTGGAGGGAACGCTCATTTTCCCCTGTCGACCTTTTCACAGATTGTACCTCAGCCTTTTCCCGGTCAACAGAATTTTGCACAGGCAGGCGAAGACTCTCGTAATCATTACGACCTGATGGGGATTACTGGCCACTGCTTGATTACAGACATGTTGCCGGAGTTTAACTCCGACTGTGCTACTGATACTCGTAGTGCTTCCGCCGGCGCCGGTGCTACGAGTCTGAGTAACGGTTTCCAAGGGGAAACAGCTTGCGACGGCGATGATGGACCAGGCAGCGGAAGATGGCCGAGACAGGAGACGCTTGCCCTACTGGAAATCAGATCTCGACTGGATCATAAGTTCAGAGAAGCGAATCAAAAGGGTCCACTGTGGGACGAAGTTTCAAGATTCATGTCCGAAGAACATGGGTACCAAAGGAGTGGGAAAAAGTGCAGAGAAAAGTTTGAAAATTTGTACAAGTATTACAAGAAGACTAAGGAAGGAAAAGCTGGAAGACAAGATGGCAAGCATTACAGATTCTTCAGACAGCTAGACGCTCTCTATGGAGAGACAAAAAATGCTGTCGCCTTCCCTCAAACTCACTGTCTCGAAACCAGAACTTTCCAGGTCCATGATAATGGCGTTTTAAGAGCTCAAAAAGCTAACCAAGAGGCTTTTAGTATTAGTCTGTCTAATTGCTCTGACTTTAATTCCACATCTTCCGATGAAAATGGAATTTTTACAGTAGGACTTGTTGATAGTGATGTTTATGCGGAGAAGAGGAGGAAACGACAAGGAAGAAGCTGGGGAGAAAAGATAAAAGAGTTTATTGATTTCCAGGTGAGCAAAATGATGGAGAAACAAGAGGTTTGGTTAGACAAGCTTATGAAAACCCTAGAACAGAAGGAGAGAGAAAGGATGGTGAGAGAGGAAGAATGGAGGAGACAAGAAGTGCTGAGGATCGAGAGAGAACAGAAAATATGGGCCAAAGAGAGAGAATGTATTGAAGCTCGTGACGCAGCTTTAATGGCGGCTTTAGCGAAACTGACCGGGAGAGAACTGGCGAATTCGTTTCAAATGGCCGAAAACGTCGACGAAGGTGATGGTTGGCCGGAATCTCGAAAAGCCAAAGAAAATTGCAAGAAACGAAAAGAGAAATCGAGTTTGTTTGGGAACGTTAATGGCTACTCTCCGTGCATCGTAGGCTCAGGAGAGAGTTCAAGGCGTCAAGCAAATAAGGAATCTTCTCCTTGTAGCTCCATTAATGGCGTACAAGGTAGCTCTTTGAAGTTCTTGATGAACGAGGGAGAGCCATTGTGGGAGAGTTATGGATTGAAGCTCAACAATGGAGATATAAACCAGTGA 1389 45.64 MDDPCGLSDLRQLVSGGNAHFPLSTFSQIVPQPFPGQQNFAQAGEDSRNHYDLMGITGHCLITDMLPEFNSDCATDTRSASAGAGATSLSNGFQGETACDGDDGPGSGRWPRQETLALLEIRSRLDHKFREANQKGPLWDEVSRFMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLDALYGETKNAVAFPQTHCLETRTFQVHDNGVLRAQKANQEAFSISLSNCSDFNSTSSDENGIFTVGLVDSDVYAEKRRKRQGRSWGEKIKEFIDFQVSKMMEKQEVWLDKLMKTLEQKERERMVREEEWRRQEVLRIEREQKIWAKERECIEARDAALMAALAKLTGRELANSFQMAENVDEGDGWPESRKAKENCKKRKEKSSLFGNVNGYSPCIVGSGESSRRQANKESSPCSSINGVQGSSLKFLMNEGEPLWESYGLKLNNGDINQ 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72923740 72925996 + Bma002736.1 Bma01g01961 76478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01961 462 Pfam Myb/SANT-like DNA-binding domain 109 195 IPR044822 -
Bma01g01961 462 MobiDBLite consensus disorder prediction 80 95 - -
Bma01g01961 462 PANTHER - 30 376 - -
Bma01g01961 462 ProSiteProfiles Myb-like domain profile. 108 167 IPR001005 -
Bma01g01961 462 MobiDBLite consensus disorder prediction 411 432 - -
Bma01g01961 462 CDD GT1 109 174 - -
Bma01g01961 462 Gene3D - 110 172 - -
Bma01g01961 462 Coils Coil 293 320 - -
Bma01g01961 462 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 30 376 - -
Bma01g01961 462 MobiDBLite consensus disorder prediction 80 110 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01961 Bma04g01593 CCT
Bma01g01961 Bma10g00079 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01961 Bma-Chr1:72923740 Bma04g00570 Bma-Chr4:5159558 0 dispersed
Bma01g01959 Bma-Chr1:72674724 Bma01g01961 Bma-Chr1:72923740 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56749 PF13837 Myb_DNA-bind_4 6.10E-20 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01961 - - pvy:116132377 382.874