Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01973 ATGGAGGGCCTAGTGTATAACCCTGCACATTCTCATCTATTCCGACCGAAACCTCTCGTTTCGGTCCCTCTTTCGTCCTTCATTGGCACTCGAATTGTGTCCACTCCCGCCACCGTCAACATTGCCAGCACTAAACCGTTTATCGTTGCTACTCTTTCCAAATCTACGGCTGAGATCTCTGAGAAGCCTGCGTCGACCATCAGCTTCGCTGCAAGGGAAGACACTGTGGCGGCGGCGCCTCCTTCCCTCCCGAGGAAAAAAGTATCGTCGGAATCTTTGCAATACACTGCCGGTTACCTCGGGGCGGTGCCGGACCGTTTGGTTCAAGATAAAGGTGATAATTACGTCAATGCCATGGGGTACTTGACTAATATTCTATGTTCGAAGGTATACGATGTTGCTATTGAATCACCGTTGCAGCTAGCCCCGAAGCTCTCGGAACGCTTAGGGGTGGAGGTTTGGCTCAAGCGGGAGGATTTGCAGCCTGTGTTTTCGTTTAAGCTTCGTGGAGCTTATAATATGATGGCAAAGCTTCCAAAAGAAAAGTTAGAAAGAGGGGTAATTTGTTCATCTGCTGGAAATCATGCTCAAGGGGTGGCATTAGCTGCCAAGAGACTAGGTTGTGATGCTGTGATTGCTATGCCAATGACTACTCCGGATATCAAATGGAAATCAGTGGAAAAGTTGGGTGCCACTGTTGTTCTTGTCGGAGATTCATATGACGAAGCGCAAAGCTATGCTAAAAAGCGAGGAGAAGAGGAAGGTCGGACATTCATACCTCCTTTCGATCACCCGGATGTCATCATGGGGCAAGGAACAGTTGGGATGGAAATTGTGCGGCAAATGAAGGGCCCTTTGCATGCAATATTTGTGCCTGTTGGGGGAGGTGGACTTATAGCTGGAATTGCTGCATATATGAAGAGAGTTTCTCCTGAGGTTAAGATTATTGGTGTGGAGCCATGTGATGCAAATGCTATGGCGTTGTCTCTACATCATGGTCAGAGAGTGATTTTGGATCAGGTTGGAGGTTTTGCAGATGGTGTTGCAGTTAAGGAGGTTGGAGAAGAACCATTTCGCTTGTGCAGAGAACTGGTGGACGGTGTAGTTCTTGTAGGCAGGGATGCTATCTGTGCCTCAATAAAGGACATGTTCGAAGAGAAGAGGAGCATCTTAGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCAGAAGCTTACTGTAAATATTATGGCTTGAAGGGAGCAAGTGTAGTTGCCATAACCAGTGGTGCAAATATGAACTTTGATAAACTCAGGTTGGTGACTGAACTGGCTAACGTCGGTCGTCAACAGGAGGCTGTGCTTGCAACCATTATGCCAGAGAAGCGTGGGAGCTTCAAACAATTTTGTGAACTGGTGGGACCCATGAATATTACTGAATTCAAATATAGGTGTAATTCCGACAAAGAGGCTGTTGTTCTTTACAGTGTTGGCATCCATACAGCTTCTGAACTTGAAGCAATGAAAAATAGGATGGAATCTTCTCAACTTAAAACTTTTAATCTCACACAAAGTGACTTGGTTAAAGATCATTTACGTTACCTGATGGGAGGCAGGTCAACTGTTCAAAATGAGGTGCTTTGTAGATTTATCTTCCCAGAGAGACCTGGCGCTTTGATGAAATTTTTGGATGCATTCAGTCCTCGTTGGAATATTAGTTTATTCCATTATCGTGGACAGGGTGAAACCGGTGCAAATGTACTAGTCGGTATTCAAGTTGCAAAGACCGAGGCAGATGAATTCCACCATCGTGCCAATGATCTTGGATACAATTATGCAATTGTAAGCGACAATGAGGAATTCCAGCTTTTGATGAATTGA 1857 45.61 MEGLVYNPAHSHLFRPKPLVSVPLSSFIGTRIVSTPATVNIASTKPFIVATLSKSTAEISEKPASTISFAAREDTVAAAPPSLPRKKVSSESLQYTAGYLGAVPDRLVQDKGDNYVNAMGYLTNILCSKVYDVAIESPLQLAPKLSERLGVEVWLKREDLQPVFSFKLRGAYNMMAKLPKEKLERGVICSSAGNHAQGVALAAKRLGCDAVIAMPMTTPDIKWKSVEKLGATVVLVGDSYDEAQSYAKKRGEEEGRTFIPPFDHPDVIMGQGTVGMEIVRQMKGPLHAIFVPVGGGGLIAGIAAYMKRVSPEVKIIGVEPCDANAMALSLHHGQRVILDQVGGFADGVAVKEVGEEPFRLCRELVDGVVLVGRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGASVVAITSGANMNFDKLRLVTELANVGRQQEAVLATIMPEKRGSFKQFCELVGPMNITEFKYRCNSDKEAVVLYSVGIHTASELEAMKNRMESSQLKTFNLTQSDLVKDHLRYLMGGRSTVQNEVLCRFIFPERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVAKTEADEFHHRANDLGYNYAIVSDNEEFQLLMN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73563184 73569163 - Bma002755.1 Bma01g01973 76490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01973 618 ProSiteProfiles ACT-like domain profile. 445 516 IPR001721 -
Bma01g01973 618 ProSiteProfiles ACT-like domain profile. 538 609 IPR001721 -
Bma01g01973 618 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 64 617 - -
Bma01g01973 618 Gene3D - 138 416 IPR036052 -
Bma01g01973 618 Gene3D Biosynthetic Threonine Deaminase; Domain 3 444 618 IPR038110 -
Bma01g01973 618 PANTHER THREONINE DEHYDRATASE 64 617 - -
Bma01g01973 618 SUPERFAMILY ACT-like 525 616 IPR045865 -
Bma01g01973 618 CDD Thr-dehyd 132 426 - -
Bma01g01973 618 Pfam Pyridoxal-phosphate dependent enzyme 133 422 IPR001926 -
Bma01g01973 618 CDD ACT_ThrD-I_1 444 527 - -
Bma01g01973 618 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 128 472 IPR036052 -
Bma01g01973 618 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 121 616 IPR005787 GO:0004794|GO:0009097
Bma01g01973 618 CDD ACT_ThrD-I_2 537 617 - -
Bma01g01973 618 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 158 171 IPR000634 GO:0006520|GO:0030170
Bma01g01973 618 Gene3D - 170 261 IPR036052 -
Bma01g01973 618 Pfam C-terminal regulatory domain of Threonine dehydratase 435 524 IPR001721 -
Bma01g01973 618 Pfam C-terminal regulatory domain of Threonine dehydratase 530 615 IPR001721 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01973 Bma-Chr1:73563184 Bma07g01466 Bma-Chr7:50330646 0 dispersed
Bma01g01973 Bma-Chr1:73563184 Bma10g00066 Bma-Chr10:614420 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01973 K01754 - qsu:111997153 941.028