Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01975 ATGCGGGTCTTCTTCTGTCCTCTGGGGGCTTTGGCTTTTTTGGTTCTGCCCCTTTCGGTGGTTTACTGCGGCTTTCCTGCTACGCTTCTTCCTCTTGAGAGAGCCTTCCCACCGACTCAACGAGTCGAATTCGACGATCTCGTAGCCCGTGACAGAGTCAGACACGGTCGTTTCTTGCAAGGTGTTGCGGGTGGTGTAGTTGACTTCTTTGTACAAGGTTCTTCTGATCCGTATTTGGTCGGGCTTTATTACACAAAAGTAAAGTTGGGAACTCCTCCAAGGGAATTCACTGTGCAGATTGATACGGGAAGTGATATTTTGTGGATCACCTGTAATTCCTGCAGCGATTGTCCTCAATCGAGTGCACTTGGGATTCAACTCAATTTCTTCGATGCGGCTAGTTCGTTTACTGCTGGCGTAATCCCCTGTTCGGACCCCATGTGTTCTTCATTTCCAACATCGGCCATTCAATGCGTTTCTCAGACTAATCAATGTAGTTACAGCTTCCAGTATGGCGATGGAAGTGGAACATCCGGGTTTTACGTATCAGATTCTTTGTATTTTGACATGGTTTTGACGGAGTCTATAGTGGTCAACTCTTCGGCTCCCATTGTTTTCGGGTGTAGCACTTATCAGACTGGGGATTTGACCAAAACAGATAAAGCAGTCGACGGAATCTTTGGTTTTGGTCGAGGCTTTTTGTCTGTTATATCGCAGCTGTCGTCTCGAGGCGTAACGCCCAAAGTATTCTCCCATTGTCTGAAAGGAAACGGCAACGGAGGGGGTATATTGGTTCTCGGCGAGATTTTGGACCCGGCCATTGTTTATACTCCACTTGTTCCGTCACAGCAGCATTATAATTTATATTTGCAGAATATTGCTGTAAATGGTCAGCCATTGCCAATTGATCCAACTGTGTTTGCTACCTCAAATAATAGAGGAACTATTGTAGATTCTGGAACAACCTTAGCATACCTTGTCAAAGATGCATATGATGCACTCGTTGACAGTATAACTGCTATAGTTTCTCAGTCTGCACCTTCTTACATTAATAAAGGATATCAGTGTTATTTAGTCTCTACCAGCCCCGTCGAAAATTTTCCCATCATTAGCTTAAACTTTATGGGTGGTGCCTCACTCGAGTTAAAACCGGAAGAGTATCTTGTGAATTTCGGTTTCACCGTAAGTGAAAATTATCTGTGTTTTCGATCTCTTTGTGTAATTATAAGATTCGAAAGATATGTTGTTCTGAAAGACAAGATCTTTGTCTATGATTTAGCTCGCGGACGGATCGGATGGGCCAACTACGATTGTTCAATGTCTGTGAATGTCTCTGTAACCTCAGGTAAAGACGAGTTTGTTGCCGGACAGCTCAGCTTTAGCAGCTCGACAAGAGATGGCCGTTTTGATCTGCTACTGATTGTAGTCTTGGGTTGCCTAATCCTTTACATTTGGTAA 1458 44.1 MRVFFCPLGALAFLVLPLSVVYCGFPATLLPLERAFPPTQRVEFDDLVARDRVRHGRFLQGVAGGVVDFFVQGSSDPYLVGLYYTKVKLGTPPREFTVQIDTGSDILWITCNSCSDCPQSSALGIQLNFFDAASSFTAGVIPCSDPMCSSFPTSAIQCVSQTNQCSYSFQYGDGSGTSGFYVSDSLYFDMVLTESIVVNSSAPIVFGCSTYQTGDLTKTDKAVDGIFGFGRGFLSVISQLSSRGVTPKVFSHCLKGNGNGGGILVLGEILDPAIVYTPLVPSQQHYNLYLQNIAVNGQPLPIDPTVFATSNNRGTIVDSGTTLAYLVKDAYDALVDSITAIVSQSAPSYINKGYQCYLVSTSPVENFPIISLNFMGGASLELKPEEYLVNFGFTVSENYLCFRSLCVIIRFERYVVLKDKIFVYDLARGRIGWANYDCSMSVNVSVTSGKDEFVAGQLSFSSSTRDGRFDLLLIVVLGCLILYIW 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73575405 73578479 - Bma002757.1 Bma01g01975 76492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01975 485 Gene3D Acid Proteases 68 268 IPR021109 -
Bma01g01975 485 Pfam Xylanase inhibitor N-terminal 83 267 IPR032861 -
Bma01g01975 485 SUPERFAMILY Acid proteases 78 442 IPR021109 -
Bma01g01975 485 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Bma01g01975 485 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Bma01g01975 485 Gene3D Acid Proteases 270 445 IPR021109 -
Bma01g01975 485 ProSiteProfiles Peptidase family A1 domain profile. 83 434 IPR033121 -
Bma01g01975 485 Pfam Xylanase inhibitor C-terminal 285 434 IPR032799 -
Bma01g01975 485 CDD pepsin_A_like_plant 83 438 IPR034161 -
Bma01g01975 485 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 455 - -
Bma01g01975 485 PANTHER ASPARTYL PROTEASES 8 455 IPR001461 GO:0004190|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01975 Bma10g00063 CCT
Bma01g01975 Bma10g00063 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01975 Bma-Chr1:73575405 Bma07g00175 Bma-Chr7:2298230 6.84E-129 dispersed
Bma01g01975 Bma-Chr1:73575405 Bma10g00063 Bma-Chr10:601870 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01975 - - jre:109008469 647.506